STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2073Probable oxidoreductase; Similar to Salvelinus fontinalis NADPH:adrenodoxin oxidoreductase, mitochondrial precursor SWALL:ADRO_SALFO (SWALL:P82861) (498 aa) fasta scores: E(): 1.5e-23, 31.73% id in 460 aa, and to Rhodococcus rhodochrous adrenodoxin reductase-like XplB SWALL:Q8GPH8 (EMBL:AF449421) (425 aa) fasta scores: E(): 2.2e-52, 40.32% id in 429 aa. (413 aa)    
Predicted Functional Partners:
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
 
 
 0.999
rfbI
Similar to Yersinia pestis, and Yersinia pseudotuberculosis CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase AscD or RfbI or ypo3116 or y1067 SWALL:ASCD_YERPE (SWALL:P37911) (328 aa) fasta scores: E(): 2.8e-45, 45.7% id in 326 aa, and to Salmonella typhimurium RfbI protein or stm2093 SWALL:RFBI_SALTY (SWALL:P26395) (330 aa) fasta scores: E(): 1.1e-50, 46.01% id in 326 aa.
  
 0.920
fpr
Similar to Escherichia coli ferredoxin--NADP reductase Fpr or MvrA or b3924 SWALL:FENR_ECOLI (SWALL:P28861) (247 aa) fasta scores: E(): 1e-75, 76.11% id in 247 aa.
     
 0.902
ECA2072
Flavodoxin; Similar to Citrobacter braakii cindoxin cinC SWALL:Q8VQF4 (EMBL:AF456128) (154 aa) fasta scores: E(): 3.2e-13, 37.5% id in 144 aa, and to Escherichia coli protein mioc mioc or b3742 SWALL:MIOC_ECOLI (SWALL:P03817) (146 aa) fasta scores: E(): 8.1e-09, 33.89% id in 118 aa.
     0.844
ECA2071
Putative cytochrome P450; Similar to Mycobacterium leprae putative cytochrome P450 ml2088 SWALL:Q9CBE7 (EMBL:AL583924) (434 aa) fasta scores: E(): 7.1e-22, 26.3% id in 422 aa, and to Bacillus subtilis putative cytochrome P450 YjiB SWALL:YJIB_BACSU (SWALL:O34374) (396 aa) fasta scores: E(): 1.8e-20, 27.11% id in 343 aa.
    
 0.649
ECA0824
Similar to Rhodospirillum rubrum pyruvate-flavodoxin oxidoreductase NifJ SWALL:NIFJ_RHORU (SWALL:Q53046) (1191 aa) fasta scores: E(): 0, 54.73% id in 1182 aa, and to Escherichia coli probable pyruvate-flavodoxin oxidoreductase ydbk or b1378 SWALL:NIFJ_ECOLI (SWALL:P52647) (1174 aa) fasta scores: E(): 0, 78.79% id in 1174 aa. Also similar to ECA2957 (47.377% id. in 1182 aa overlap).
  
  
 0.560
hcr
Similar to Escherichia coli NADH oxidoreductase Hcr or b0872 SWALL:HCR_ECOLI (SWALL:P75824) (322 aa) fasta scores: E(): 1.3e-46, 61.14% id in 332 aa.
   
 0.510
ECA0820
Similar to Emericella nidulans O-acetyl-L-homoserine sulfhydrylase CysD SWALL:O13387 (EMBL:AF029318) (437 aa) fasta scores: E(): 2.6e-79, 52.47% id in 425 aa, and to Shewanella oneidensis O-acetylhomoserine so1095 SWALL:AAN54166 (EMBL:AE015554) (430 aa) fasta scores: E(): 3.2e-138, 85.21% id in 426 aa.
   
  
 0.496
napF
Ferredoxin-type protein; Could be involved in the maturation of NapA, the catalytic subunit of the periplasmic nitrate reductase, before its export into the periplasm; Belongs to the NapF family.
  
  
 0.478
fre
NAD(P)H-flavin reductase; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 NAD(P)H-flavin reductase Fre or FlrD or FadI or FsrC or UbiB or b3844 or c4791 or z5365 or ecs4772 SWALL:FRE_ECOLI (SWALL:P23486) (232 aa) fasta scores: E(): 5.8e-71, 75.86% id in 232 aa.
  
 
 0.473
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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