STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpQType III secretion protein; Similar to Erwinia amylovora HrpQ SWALL:Q46641 (EMBL:L25828) (310 aa) fasta scores: E(): 3.4e-50, 48.89% id in 317 aa, and to Pantoea agglomerans HrpQ protein HrpQ SWALL:Q937I4 (EMBL:X99768) (307 aa) fasta scores: E(): 4.9e-47, 46.96% id in 313 aa. (311 aa)    
Predicted Functional Partners:
hrpI
Type III secretion protein; Similar to Erwinia amylovora harpin secretion protein HrpI SWALL:HRPI_ERWAM (SWALL:P35654) (697 aa) fasta scores: E(): 2e-193, 76.35% id in 702 aa, and to Pantoea agglomerans HrcV protein HrcV SWALL:Q937I5 (EMBL:X99768) (719 aa) fasta scores: E(): 2.2e-196, 75.42% id in 704 aa.
  
  
 0.957
hrcQ
Type III secretion protein; Similar to Erwinia amylovora HrcQ SWALL:Q46645 (EMBL:L25828) (338 aa) fasta scores: E(): 1.8e-11, 34.59% id in 370 aa, and to Pantoea agglomerans HrcQb protein SWALL:Q47855 (EMBL:X99768) (108 aa) fasta scores: E(): 9.8e-11, 46.22% id in 106 aa.
  
 
 0.934
hrcN
Type III secretion protein; Similar to Erwinia amylovora HrcN SWALL:Q46642 (EMBL:L25828) (454 aa) fasta scores: E(): 3.9e-124, 78.7% id in 446 aa, and to Pantoea agglomerans HrcN protein HrcN SWALL:Q937I3 (EMBL:X99768) (454 aa) fasta scores: E(): 4.7e-121, 76.4% id in 445 aa.
  
 
 0.928
hrcT
Type III secretion protein; Similar to Erwinia amylovora HrcT SWALL:Q46648 (EMBL:L25828) (265 aa) fasta scores: E(): 2.4e-69, 66.92% id in 257 aa, and to Pantoea agglomerans HrcT protein HrcT SWALL:Q47858 (EMBL:X99768) (265 aa) fasta scores: E(): 4.5e-67, 62.3% id in 260 aa.
  
  
 0.914
hrcR
Type III secretion protein; Similar to Erwinia herbicola harpin secretion protein HrcR SWALL:HRCR_ERWHE (SWALL:Q47856) (217 aa) fasta scores: E(): 6.3e-63, 74.19% id in 217 aa, and to Erwinia amylovora harpin secretion protein HrcR SWALL:HRCR_ERWAM (SWALL:Q46646) (217 aa) fasta scores: E(): 1.8e-62, 75.57% id in 217 aa.
  
  
 0.911
hrcU
Type III secretion protein; Similar to Erwinia amylovora HrcU SWALL:Q46649 (EMBL:L25828) (360 aa) fasta scores: E(): 1e-95, 66.94% id in 360 aa, and to Pantoea agglomerans HrcU protein HrcU SWALL:Q47859 (EMBL:X99768) (360 aa) fasta scores: E(): 5.4e-92, 64.34% id in 359 aa.
  
  
 0.909
hrcS
Type III secretion protein; Similar to Erwinia amylovora HrcS SWALL:Q46647 (EMBL:L25828) (86 aa) fasta scores: E(): 2.8e-22, 76.19% id in 84 aa, and to Pantoea agglomerans HrcS protein HrcS SWALL:Q47857 (EMBL:X99768) (83 aa) fasta scores: E(): 2.6e-21, 75.61% id in 82 aa.
  
  
 0.907
hrpJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. atrosepticum secretion protein HrpJ type III HrpJ SWALL:Q8KM25 (EMBL:AJ496800) (402 aa) fasta scores: E(): 1.2e-121, 90.79% id in 402 aa, and to Erwinia chrysanthemi HrpJ WALL:AAO34609 (EMBL:AY169276) (393 aa) fasta scores: E(): 2.3e-80, 64.59% id in 387 aa.
  
  
 0.886
hrpO
Type III secretion protein; Similar to Erwinia amylovora HrpO SWALL:Q46643 (EMBL:L25828) (148 aa) fasta scores: E(): 6.5e-09, 41.73% id in 127 aa, and to Pantoea agglomerans HrpO protein SWALL:Q937I2 (EMBL:X99768) (146 aa) fasta scores: E(): 0.0013, 30.7% id in 127 aa.
       0.801
hrpP
Type III secretion protein; Similar to Erwinia amylovora HrpP SWALL:Q46644 (EMBL:L25828) (158 aa) fasta scores: E(): 1.6e-06, 36.6% id in 112 aa, and to Pantoea agglomerans HrcQa protein hrcQa SWALL:Q47853 (EMBL:X99768) (157 aa) fasta scores: E(): 8e-06, 28.81% id in 118 aa.
       0.784
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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