STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2091Putative signaling membrane protein; Similar to Pseudomonas aeruginosa hypothetical protein Pa2200 SWALL:Q9I1R7 (EMBL:AE004646) (531 aa) fasta scores: E(): 4e-52, 32.23% id in 518 aa, and to Salmonella typhimurium putative diguanylate cyclase/phosphodiesterase domain 2 ylab or stm0468 SWALL:Q8ZRB0 (EMBL:AE008717) (516 aa) fasta scores: E(): 2.3e-34, 29.72% id in 508 aa. (539 aa)    
Predicted Functional Partners:
ECA3270
Putative exported protein; Similar to Rhizobium meliloti hypothetical protein r00959 or smc00038 SWALL:Q92KJ3 (EMBL:AL591785) (772 aa) fasta scores: E(): 1e-48, 35.35% id in 461 aa, and to Xanthomonas campestris c-di-gmp phosphodiesterase A PdeA or xcc1865 SWALL:Q8P9J8 (EMBL:AE012289) (726 aa) fasta scores: E(): 1.1e-41, 31.81% id in 462 aa.
 
  
 0.942
ECA1086
Putative signaling protein; Similar to the C-terminal regions of several including Pseudomonas aeruginosa hypothetical protein Pa1107 pa1107 SWALL:Q9I4M8 (EMBL:AE004541) (398 aa) fasta scores: E(): 2.1e-17, 39.68% id in 189 aa, and to Xanthomonas axonopodis ggdef family protein xac1939 SWALL:Q8PL67 (EMBL:AE011829) (948 aa) fasta scores: E(): 5.2e-16, 37.43% id in 203 aa.
   
 0.911
adrA
Putative signaling membrane protein; Similar to Salmonella typhimurium AdrA protein AdrA or YaiC or stm0385 SWALL:Q9L401 (EMBL:AJ271071) (370 aa) fasta scores: E(): 1.7e-63, 46.49% id in 342 aa, and to Escherichia coli, and Escherichia coli O6 hypothetical protein YaiC or b0385 or c0492 SWALL:YAIC_ECOLI (SWALL:P21830) (371 aa) fasta scores: E(): 2.9e-66, 47.98% id in 348 aa.
   
 0.807
ECA3886
Putative membrane protein; Similar to the C-terminal region of many including Pseudomonas aeruginosa hypothetical protein Pa2870 SWALL:Q9HZX6 (EMBL:AE004713) (525 aa) fasta scores: E(): 1.9e-17, 39.39% id in 165 aa, and to Shewanella oneidensis ggdef domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2.1e-17, 39.03% id in 187 aa.
 
   
 0.777
ECA0659
Putative signaling membrane protein; Similar to Pseudomonas putida GGDEF domain protein pp3932 SWALL:AAN69526 (EMBL:AE016788) (402 aa) fasta scores: E(): 3e-26, 29.21% id in 397 aa, and to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein YddV SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 6.6e-17, 33.83% id in 198 aa.
 
   
 0.769
ECA3271
Similar to Yersinia pestis hypothetical protein Ypo3988 SWALL:Q8ZA32 (EMBL:AJ414160) (276 aa) fasta scores: E(): 1.6e-49, 51.48% id in 235 aa, and to Escherichia coli O157:H7 orf, hypothetical protein yhjh or z4939 or ecs4405 SWALL:Q8X5M5 (EMBL:AE005578) (255 aa) fasta scores: E(): 5.4e-46, 50.63% id in 237 aa.
  
   
 0.769
ECA3199
Putative membrane protein; Similar to Yersinia pestis HmsT or ypo0425 or y3756 SWALL:AAM87301 (EMBL:AF129277) (390 aa) fasta scores: E(): 1.1e-12, 28.21% id in 319 aa, and to Pseudomonas putida GGDEF domain protein pp3452 SWALL:AAN69054 (EMBL:AE016786) (363 aa) fasta scores: E(): 2.2e-12, 32.65% id in 245 aa.
 
     0.766
ECA1681
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein yddv or b1490 or z2219 or ecs2095 SWALL:YDDV_ECOLI (SWALL:P77793) (460 aa) fasta scores: E(): 3.2e-64, 42.62% id in 427 aa, and to Shigella flexneri orf, conserved hypothetical protein yddv or sf1736.1 SWALL:AAN43312 (EMBL:AE015194) (381 aa) fasta scores: E(): 7.6e-44, 40.85% id in 328 aa.
 
   
 0.764
ECA2840
Putative membrane protein; Similar to Shewanella oneidensis GGDEF domain protein so4457 SWALL:AAN57422 (EMBL:AE015878) (485 aa) fasta scores: E(): 2e-99, 51.03% id in 482 aa, and to Vibrio cholerae GGDEF family protein vc2224 SWALL:Q9KPY8 (EMBL:AE004294) (512 aa) fasta scores: E(): 2.3e-83, 45.97% id in 485 aa.
   
 0.742
ECA3148
Putative regulator; Similar to Pseudomonas putida GGDEF domain protein pp3242 SWALL:AAN68849 (EMBL:AE016786) (522 aa) fasta scores: E(): 4.1e-67, 38.67% id in 499 aa, and to Xanthomonas campestris response regulator xcc3729 SWALL:Q8P4H8 (EMBL:AE012493) (349 aa) fasta scores: E(): 4.4e-44, 39.94% id in 358 aa.
 
   
 0.740
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.