STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
hrpAType III secretion protein; Major structure protein of the hrp pilus, which is a component of the type III secretion system (TTSS, Hrp secretion system) required for effector protein delivery, parasitism, and pathogenicity. The hrp pilus functions as a conduit for protein delivery into the host cell (By similarity); Belongs to the HrpA type 2 family. (68 aa)    
Predicted Functional Partners:
hrcJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa.
     
 0.876
hrpB
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpB SWALL:Q93FZ7 (EMBL:AF302656) (144 aa) fasta scores: E(): 1.3e-49, 95.1% id in 143 aa, and to Erwinia chrysanthemi HrpB SWALL:Q8KUM0 (EMBL:AF448202) (122 aa) fasta scores: E(): 1.9e-18, 62.03% id in 108 aa.
       0.786
hrpD
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpD SWALL:Q93FZ5 (EMBL:AF302656) (209 aa) fasta scores: E(): 2.5e-67, 76.52% id in 213 aa, and to Erwinia chrysanthemi HrpD SWALL:Q8KUL8 (EMBL:AF448202) (192 aa) fasta scores: E(): 3.3e-21, 43.14% id in 197 aa.
     
 0.778
hrpF
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpF SWALL:Q93FZ3 (EMBL:AF302656) (74 aa) fasta scores: E(): 3.6e-27, 97.29% id in 74 aa, and to Erwinia chrysanthemi HrpF SWALL:P94765 (EMBL:AF501263) (75 aa) fasta scores: E(): 6.1e-19, 72.6% id in 73 aa.
     
 0.714
hrpG
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpG SWALL:Q93FZ2 (EMBL:AF302656) (136 aa) fasta scores: E(): 3.7e-48, 87.5% id in 136 aa, and to Erwinia chrysanthemi putative secretion protein HrpG SWALL:Q8KWF8 (EMBL:AF411590) (144 aa) fasta scores: E(): 1.1e-22, 49.26% id in 136 aa.
     
 0.702
hrpN
Harpin; Similar to Pectobacterium carotovorum subsp. carotovorum HrpN SWALL:Q93FY8 (EMBL:AF302656) (356 aa) fasta scores: E(): 4e-79, 91.37% id in 371 aa, and to Erwinia carotovora harpin hrpN SWALL:HRPN_ERWCA (SWALL:Q47279) (356 aa) fasta scores: E(): 2.2e-78, 90.83% id in 371 aa.
     
 0.662
hrpE
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa.
       0.653
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
     
 0.609
dspE
Putative avirulence protein; Similar to Erwinia amylovora DspE or DspA SWALL:O54581 (EMBL:U97504) (1838 aa) fasta scores: E(): 1.7e-101, 39.38% id in 1658 aa, and to Pseudomonas syringae avirulence protein AvrE SWALL:O66101 (EMBL:U97505) (1795 aa) fasta scores: E(): 1.6e-30, 28.32% id in 1592 aa.
      
 0.509
hrpL
Sigma factor; Similar to Erwinia chrysanthemi HrpL WALL:Q8KUM5 (EMBL:AF448202) (184 aa) fasta scores: E(): 9.4e-40, 71.42% id in 168 aa, and to Erwinia pyrifoliae sigma factor hrpL SWALL:CAD27523 (EMBL:AJ438881) (182 aa) fasta scores: E(): 1.9e-31, 56.97% id in 165 aa; Belongs to the sigma-70 factor family. ECF subfamily.
      
 0.498
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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