STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpEType III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa. (200 aa)    
Predicted Functional Partners:
flgJ
Peptidoglycan hydrolase; Similar to Salmonella typhimurium peptidoglycan hydrolase FlgJ or FlaZ or Fla FX or stm1182 SWALL:FLGJ_SALTY (SWALL:P15931) (316 aa) fasta scores: E(): 8.9e-65, 61.49% id in 322 aa.
  
  
 0.964
hrcJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa.
  
  
 0.898
fliG
Flagellar motor switch protein; FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.829
fliI
Similar to Salmonella typhimurium flagellum-specific ATP synthase FliI or Fla AIII or FlaC or stm1972 SWALL:FLII_SALTY (SWALL:P26465) (456 aa) fasta scores: E(): 1.5e-139, 85.24% id in 454 aa.
  
 
 0.819
hrcN
Type III secretion protein; Similar to Erwinia amylovora HrcN SWALL:Q46642 (EMBL:L25828) (454 aa) fasta scores: E(): 3.9e-124, 78.7% id in 446 aa, and to Pantoea agglomerans HrcN protein HrcN SWALL:Q937I3 (EMBL:X99768) (454 aa) fasta scores: E(): 4.7e-121, 76.4% id in 445 aa.
  
 
 0.819
fliM
Flagellar motor switch protein; FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation.
  
 
 0.803
fliF
Flagellar M-ring protein; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
  
  
 0.792
flgC
Flagellar basal-body rod protein; Similar to Salmonella typhimurium, and Salmonella typhi flagellar basal-body rod protein FlgC or FlaW or Fla Fiii or stm1175 or sty1214 SWALL:FLGC_SALTY (SWALL:P16438) (134 aa) fasta scores: E(): 7.9e-37, 81.34% id in 134 aa.
  
  
 0.789
fliE
Flagellar hook-basal body complex protein; Similar to Escherichia coli, and Escherichia coli O157:H7 flagellar hook-basal body complex protein FliE or FlaN or Fla AI or b1937 or z3027 or ecs2676 SWALL:FLIE_ECOLI (SWALL:P25797) (103 aa) fasta scores: E(): 1.8e-20, 63.46% id in 104 aa.
  
  
 0.789
fliL
Flagellar protein; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
  
 0.786
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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