STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpGType III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpG SWALL:Q93FZ2 (EMBL:AF302656) (136 aa) fasta scores: E(): 3.7e-48, 87.5% id in 136 aa, and to Erwinia chrysanthemi putative secretion protein HrpG SWALL:Q8KWF8 (EMBL:AF411590) (144 aa) fasta scores: E(): 1.1e-22, 49.26% id in 136 aa. (136 aa)    
Predicted Functional Partners:
hrcC
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcC SWALL:Q93FZ1 (EMBL:AF302656) (689 aa) fasta scores: E(): 0, 95.78% id in 688 aa, and to Erwinia amylovora HrcC precursor SWALL:Q46625 (EMBL:U56662) (676 aa) fasta scores: E(): 1.3e-169, 68.65% id in 654 aa.
     
 0.885
hrpF
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpF SWALL:Q93FZ3 (EMBL:AF302656) (74 aa) fasta scores: E(): 3.6e-27, 97.29% id in 74 aa, and to Erwinia chrysanthemi HrpF SWALL:P94765 (EMBL:AF501263) (75 aa) fasta scores: E(): 6.1e-19, 72.6% id in 73 aa.
     
 0.878
hrpV
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpV SWALL:Q93FY9 (EMBL:AF302656) (115 aa) fasta scores: E(): 8.9e-35, 80% id in 115 aa, and to Erwinia chrysanthemi HrpV SWALL:P94769 (EMBL:AF501263) (136 aa) fasta scores: E(): 8.8e-07, 34.51% id in 113 aa.
     
 0.853
hrpT
Type III secretion lipoprotein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpT SWALL:Q93FZ0 (EMBL:AF302656) (63 aa) fasta scores: E(): 9.6e-22, 84.12% id in 63 aa, and to Erwinia chrysanthemi HrpT precursor SWALL:P94768 (EMBL:AF501263) (61 aa) fasta scores: E(): 6.3e-11, 50.82% id in 61 aa.
       0.699
hrpA
Type III secretion protein; Major structure protein of the hrp pilus, which is a component of the type III secretion system (TTSS, Hrp secretion system) required for effector protein delivery, parasitism, and pathogenicity. The hrp pilus functions as a conduit for protein delivery into the host cell (By similarity); Belongs to the HrpA type 2 family.
     
 0.692
hrcJ
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrcJ SWALL:Q93FZ6 (EMBL:AF302656) (255 aa) fasta scores: E(): 2.1e-90, 95.66% id in 254 aa, and to Erwinia chrysanthemi HrcJ SWALL:Q8KUL9 (EMBL:AF448202) (245 aa) fasta scores: E(): 5.5e-67, 75.94% id in 237 aa.
     
 0.689
hrpN
Harpin; Similar to Pectobacterium carotovorum subsp. carotovorum HrpN SWALL:Q93FY8 (EMBL:AF302656) (356 aa) fasta scores: E(): 4e-79, 91.37% id in 371 aa, and to Erwinia carotovora harpin hrpN SWALL:HRPN_ERWCA (SWALL:Q47279) (356 aa) fasta scores: E(): 2.2e-78, 90.83% id in 371 aa.
     
 0.686
hrpP
Type III secretion protein; Similar to Erwinia amylovora HrpP SWALL:Q46644 (EMBL:L25828) (158 aa) fasta scores: E(): 1.6e-06, 36.6% id in 112 aa, and to Pantoea agglomerans HrcQa protein hrcQa SWALL:Q47853 (EMBL:X99768) (157 aa) fasta scores: E(): 8e-06, 28.81% id in 118 aa.
      
 0.541
hrpX
Two-component sensor kinase; Similar to Erwinia chrysanthemi HrpX SWALL:Q8KUM4 (EMBL:AF448202) (450 aa) fasta scores: E(): 3.4e-115, 68.25% id in 441 aa, and to Erwinia amylovora sensor kinase HrpX SWALL:Q9X3S8 (EMBL:AF083877) (494 aa) fasta scores: E(): 9.5e-100, 56.13% id in 481 aa.
      
 0.506
hrpE
Type III secretion protein; Similar to Pectobacterium carotovorum subsp. carotovorum HrpE SWALL:Q93FZ4 (EMBL:AF302656) (199 aa) fasta scores: E(): 3.5e-65, 87.37% id in 198 aa, and to Erwinia chrysanthemi HrpE SWALL:Q8KUL7 (EMBL:AF448202) (200 aa) fasta scores: E(): 7.5e-28, 42.85% id in 196 aa.
       0.506
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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