STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2104VgrG protein; Similar to Escherichia coli VgrG protein SWALL:O52679 (EMBL:AF044506) (713 aa) fasta scores: E(): 4.2e-76, 37.78% id in 651 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 1.2e-121, 52.95% id in 676 aa. (675 aa)    
Predicted Functional Partners:
ECA2110
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 3.1e-16, 58.51% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 8.3e-15, 58.51% id in 94 aa.
 
   
 0.898
ECA2106
Hypothetical protein; No significant database matches. Strongly similar to ECA4356 (88.084% id) and ECA4431 (87.651% id).
 
     0.887
ECA3438
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa.
 
  
 0.874
ECA3432
Putative virulence-associated protein; Similar to Rhizobium leguminosarum ImpL SWALL:Q93EC2 (EMBL:AF361470) (1158 aa) fasta scores: E(): 1.3e-19, 25.08% id in 1200 aa, and to Escherichia coli O157:H7 putative macrophage toxin z0250 or ecs0218 SWALL:Q8X7W9 (EMBL:AE005197) (1144 aa) fasta scores: E(): 7.8e-112, 44.66% id in 1153 aa, and to Photorhabdus luminescens Pmt1 SWALL:AAN64194 (EMBL:AY144117) (1181 aa) fasta scores: E(): 1.3e-127, 44.42% id in 1184 aa, and to Legionella pneumophila IcmF protein IcmF SWALL:O54529 (EMBL:Y15044) (973 aa) fasta scores: E(): 7.8e-16, 20.74% id in 969 aa.
 
  
 0.870
ECA3442
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa.
 
  
 0.863
ECA3445
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa.
 
  
 0.862
ECA3426
Putative phospholipase; Similar to Serratia liquefaciens extracellular phospholipase A1 precursor PhlA SWALL:PA1_SERLI (SWALL:P18952) (319 aa) fasta scores: E(): 4.2e-06, 30.09% id in 216 aa, and to Xanthomonas campestris phospholipase A1 xcc2722 SWALL:Q8P791 (EMBL:AE012385) (398 aa) fasta scores: E(): 3e-09, 33.82% id in 204 aa.
  
   
 0.846
ECA3440
Similar to Yersinia pestis hypothetical protein ypo3595 or y0279 SWALL:Q8ZB34 (EMBL:AJ414157) (438 aa) fasta scores: E(): 1.1e-36, 40.92% id in 435 aa, and to Escherichia coli O157:H7 hypothetical protein z0258 or ecs0227 SWALL:Q8X7U8 (EMBL:AE005198) (433 aa) fasta scores: E(): 1.3e-35, 39.2% id in 426 aa.
 
  
 0.843
ECA2105
Type III secretion protein; Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa.
     
 0.838
ECA3433
Conserved hypothetical protein; Similar to Photorhabdus luminescens Orf1 SWALL:AAN64193 (EMBL:AY144117) (334 aa) fasta scores: E(): 1e-39, 39.56% id in 321 aa, and to Vibrio cholerae hypothetical protein Vca0119 SWALL:Q9KN46 (EMBL:AE004353) (469 aa) fasta scores: E(): 2.8e-42, 34.05% id in 464 aa.
 
   
 0.812
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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