STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2106Hypothetical protein; No significant database matches. Strongly similar to ECA4356 (88.084% id) and ECA4431 (87.651% id). (664 aa)    
Predicted Functional Partners:
ECA2104
VgrG protein; Similar to Escherichia coli VgrG protein SWALL:O52679 (EMBL:AF044506) (713 aa) fasta scores: E(): 4.2e-76, 37.78% id in 651 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 1.2e-121, 52.95% id in 676 aa.
 
     0.887
ECA2105
Type III secretion protein; Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa.
       0.778
ECA2107
Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.1e-26, 42.85% id in 224 aa, and to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.3e-25, 39.66% id in 237 aa. Also similar to ECA2108 (83.051% id), ECA2109 (72.152% id), ECA4357 (77.637% id) and ECA4430 (80.085% id).
       0.773
ECA3445
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpB SWALL:Q93ED2 (EMBL:AF361470) (181 aa) fasta scores: E(): 2.6e-09, 32.66% id in 150 aa, and to Yersinia pestis conserved hypothetical protein y0037 SWALL:AAM83632 (EMBL:AE013605) (166 aa) fasta scores: E(): 5.6e-39, 68.71% id in 163 aa.
 
  
 0.770
ECA3441
Similar to Vibrio cholerae hypothetical protein Vca0111 SWALL:Q9KN54 (EMBL:AE004353) (338 aa) fasta scores: E(): 1.1e-59, 46.8% id in 329 aa, and to Yersinia pestis hypothetical protein Ypo3594 SWALL:Q8ZB35 (EMBL:AJ414157) (349 aa) fasta scores: E(): 2.5e-47, 54.6% id in 326 aa.
 
  
 0.764
ECA3442
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpG SWALL:Q93EC7 (EMBL:AF361470) (593 aa) fasta scores: E(): 1.6e-27, 31.91% id in 611 aa, and to Vibrio cholerae hypothetical protein Vca0110 SWALL:Q9KN55 (EMBL:AE004353) (589 aa) fasta scores: E(): 9.2e-130, 51.52% id in 592 aa.
 
  
 0.703
ECA3444
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpC SWALL:Q93ED1 (EMBL:AF361470) (493 aa) fasta scores: E(): 6.4e-63, 37.36% id in 479 aa, and to Yersinia pestis hypothetical protein ypo3706 ypo3706 or y0038 SWALL:Q8ZAT4 (EMBL:AJ414158) (493 aa) fasta scores: E(): 3.1e-158, 78.09% id in 493 aa.
 
  
 0.687
ECA3437
Putative membrane protein; Similar to Rhizobium leguminosarum ImpK SWALL:Q93EC3 (EMBL:AF361470) (510 aa) fasta scores: E(): 3.4e-16, 27.58% id in 232 aa, and to Yersinia pestis putative membrane protein ypo3598 or y0276 SWALL:AAM83868 (EMBL:AJ414157) (255 aa) fasta scores: E(): 4e-46, 46.45% id in 254 aa.
 
  
 0.684
ECA3438
Conserved hypothetical protein; Similar to Rhizobium leguminosarum ImpJ SWALL:Q93EC4 (EMBL:AF361470) (446 aa) fasta scores: E(): 7.8e-61, 40.04% id in 447 aa, and to Vibrio cholerae hypothetical protein Vca0114 SWALL:Q9KN51 (EMBL:AE004353) (444 aa) fasta scores: E(): 4.7e-104, 60.04% id in 443 aa.
 
  
 0.647
ECA2108
Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 6.5e-27, 38.91% id in 239 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.8e-25, 40% id in 225 aa.
       0.603
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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