STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2108Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 6.5e-27, 38.91% id in 239 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.8e-25, 40% id in 225 aa. (236 aa)    
Predicted Functional Partners:
ECA2105
Type III secretion protein; Weakly similar to Xanthomonas oryzae HrpG SWALL:Q938P2 (EMBL:AY049753) (263 aa) fasta scores: E(): 8, 28.07% id in 114 aa, and to Vibrio cholerae hypothetical protein Vc1417 SWALL:Q9KS44 (EMBL:AE004220) (286 aa) fasta scores: E(): 1.1e-07, 26.29% id in 251 aa.
     
 0.716
ECA2104
VgrG protein; Similar to Escherichia coli VgrG protein SWALL:O52679 (EMBL:AF044506) (713 aa) fasta scores: E(): 4.2e-76, 37.78% id in 651 aa, and to Vibrio cholerae VgrG protein vc1416 SWALL:Q9KS45 (EMBL:AE004220) (1163 aa) fasta scores: E(): 1.2e-121, 52.95% id in 676 aa.
     
 0.715
ECA2110
Similar to Vibrio cholerae hypothetical protein Vca0105 SWALL:Q9KN60 (EMBL:AE004353) (94 aa) fasta scores: E(): 3.1e-16, 58.51% id in 94 aa, and to Escherichia coli O6 hypothetical protein c1887 SWALL:AAN80347 (EMBL:AE016760) (94 aa) fasta scores: E(): 8.3e-15, 58.51% id in 94 aa.
     
 0.709
ECA2106
Hypothetical protein; No significant database matches. Strongly similar to ECA4356 (88.084% id) and ECA4431 (87.651% id).
       0.603
ECA2107
Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 3.1e-26, 42.85% id in 224 aa, and to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 1.3e-25, 39.66% id in 237 aa. Also similar to ECA2108 (83.051% id), ECA2109 (72.152% id), ECA4357 (77.637% id) and ECA4430 (80.085% id).
      
0.603
ECA2109
Putative lipoprotein; Similar to Shewanella oneidensis hypothetical protein soa0070 SWALL:AAN53005 (EMBL:AE015914) (234 aa) fasta scores: E(): 7.6e-29, 40.75% id in 238 aa, and to Shewanella oneidensis hypothetical protein soa0150 SWALL:AAN53066 (EMBL:AE015921) (221 aa) fasta scores: E(): 9.1e-28, 43.55% id in 225 aa. Also similar to ECA2107 (72.152% id), ECA2108 (72.152% id), ECA4357 (87.234% id) and ECA4430 (85.470% id).
      
0.603
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.