STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpWType III effector protein; Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa. (479 aa)    
Predicted Functional Partners:
celB
Beta(1,4)-glucan glucanohydrolase; Similar to Pectobacterium carotovorum subsp. carotovorum beta(1,4)-glucan glucanohydrolase CelB SWALL:O31030 (EMBL:AF025769) (264 aa) fasta scores: E(): 1.1e-97, 91.66% id in 264 aa, and to Erwinia carotovora endoglucanase S precursor CelS SWALL:GUNS_ERWCA (SWALL:P16630) (264 aa) fasta scores: E(): 1.9e-93, 85.6% id in 264 aa; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
 
 0.858
dspE
Putative avirulence protein; Similar to Erwinia amylovora DspE or DspA SWALL:O54581 (EMBL:U97504) (1838 aa) fasta scores: E(): 1.7e-101, 39.38% id in 1658 aa, and to Pseudomonas syringae avirulence protein AvrE SWALL:O66101 (EMBL:U97505) (1795 aa) fasta scores: E(): 1.6e-30, 28.32% id in 1592 aa.
     
 0.832
ECA2111
Similar to Erwinia amylovora potential HrpW-specific chaperone SWALL:O87915 (EMBL:U94513) (110 aa) fasta scores: E(): 2e-10, 38.46% id in 104 aa.
       0.791
pelI
Pectate lyase; Similar to Erwinia carotovora pectate lyase PelB SWALL:Q47471 (EMBL:X79232) (347 aa) fasta scores: E(): 1.3e-129, 93.66% id in 347 aa, and to Erwinia carotovora pectate lyase Pel-3 SWALL:Q47465 (EMBL:L32172) (347 aa) fasta scores: E(): 1.6e-128, 92.5% id in 347 aa, and to Erwinia chrysanthemi endo-pectate lyase precursor PelI SWALL:O50325 (EMBL:Y13340) (344 aa) fasta scores: E(): 6e-87, 64.57% id in 350 aa.
  
     0.770
pnl
Pectin lyase; Previously sequenced as Erwinia carotovora pectin lyase Pnl SWALL:PLYD_ERWCA (SWALL:P24112) (314 aa) fasta scores: E(): 5.8e-119, 94.58% id in 314 aa.
  
   
 0.769
dspF
Putative avirulence protein; Similar to Erwinia amylovora DspF or DspB SWALL:O54621 (EMBL:U97504) (139 aa) fasta scores: E(): 1.8e-19, 42.85% id in 133 aa, and to Pseudomonas syringae avirulence protein AvrF SWALL:O66102 (EMBL:U97505) (129 aa) fasta scores: E(): 1.1e-13, 36.64% id in 131 aa.
     
 0.753
pelC
Pectate lyase III; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.751
pelA
Pectate lyase I; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.741
pelB
Pectate lyase II; Involved in maceration and soft-rotting of plant tissue.
 
   
 0.740
ECA2553
Pectate lyase; Similar to Erwinia chrysanthemi pectate lyase L precursor PelL SWALL:PELL_ERWCH (SWALL:Q47473) (425 aa) fasta scores: E(): 9.3e-21, 39.57% id in 422 aa, and to Erwinia chrysanthemi pectate lyase PelL1 SWALL:Q9RP65 (EMBL:AF171228) (425 aa) fasta scores: E(): 2.9e-20, 37.79% id in 418 aa.
  
    0.727
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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