STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2115Similar to Rhizobium meliloti putative GntR-family transcriptional regulator ra0971 or sma1759 SWALL:Q92YB3 (EMBL:AE007283) (226 aa) fasta scores: E(): 4.3e-29, 45.23% id in 210 aa, and to Brucella suis transcriptional regulator, putative bra1096 SWALL:AAN34260 (EMBL:AE014602) (237 aa) fasta scores: E(): 3e-22, 40.65% id in 214 aa. (221 aa)    
Predicted Functional Partners:
ECA2143
Similar to Streptomyces coelicolor putative GntR-family transcriptional regulator sco3810 or scgd3.11C SWALL:Q9XA67 (EMBL:AL939117) (216 aa) fasta scores: E(): 1.1e-13, 32.09% id in 215 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein bll3877 SWALL:BAC49142 (EMBL:AP005949) (217 aa) fasta scores: E(): 2e-12, 30.88% id in 204 aa.
  
     0.685
pdhR
Pyruvate dehydrogenase complex repressor; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 pyruvate dehydrogenase complex repressor PdhR or GenA or AceC or b0113 or c0140 or z0123 or ecs0117 SWALL:PDHR_ECOLI (SWALL:P06957) (254 aa) fasta scores: E(): 2.9e-77, 82.28% id in 254 aa.
  
  
 0.534
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.503
ilvH
Similar to Escherichia coli acetolactate synthase isozyme III small subunit IlvH or BrnP or b0078 SWALL:ILVH_ECOLI (SWALL:P00894) (163 aa) fasta scores: E(): 1.2e-48, 87.11% id in 163 aa.
  
    0.455
ECA3644
Similar to Escherichia coli uxu operon transcriptional regulator UxuR or b4324 SWALL:UXUR_ECOLI (SWALL:P39161) (257 aa) fasta scores: E(): 3.4e-39, 48.58% id in 247 aa, and to Yersinia pestis putative transcriptional regulatory protein ypo1279 or uxur or y2904 SWALL:Q8ZGL0 (EMBL:AJ414147) (266 aa) fasta scores: E(): 3.5e-46, 51.98% id in 252 aa.
  
  
 0.431
dgoR
Similar to Escherichia coli galactonate operon transcriptional repressor DgoR or b3694/b3695 SWALL:DGOR_ECOLI (SWALL:P31460) (229 aa) fasta scores: E(): 6.9e-70, 80.61% id in 227 aa; putative GntR-family transcriptional regulator.
  
  
 0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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