STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hecBPutative hemolysin activator protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa. (557 aa)    
Predicted Functional Partners:
hecA1
Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:AAN38708 (EMBL:AF501263) (3848 aa) fasta scores: E(): 3.6e-110, 43.11% id in 1148 aa.
 
 0.975
hecA2
Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:P94772 (EMBL:AF501263) (3848 aa) fasta scores: E(): 7.2e-116, 36.39% id in 4407 aa.
 
 0.946
HecA2
Similar to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.6e-19, 50.5% id in 295 aa.
 
 0.832
ECA3075
Putative fimbrial chaperone; Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa.
  
  
 0.717
ECA0980
Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa.
  
  
 0.706
ECA0396
Putative haemolysin-like protein; Similar to Yersinia pestis hypothetical protein Ypo2486 SWALL:Q8ZDS0 (EMBL:AJ414152) (677 aa) fasta scores: E(): 5.9e-27, 40.91% id in 479 aa, and to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.9e-22, 43.51% id in 347 aa.
 
 0.690
ECA0391
Putative activator or transporter protein of haemolysin-like protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis putative hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa.
  
  
 
0.652
ECA3266
Similar to Ralstonia solanacearum putative hemagglutinin/hemolysin-related protein rsp1180 or rs05070 SWALL:Q8XQP2 (EMBL:AL646083) (4106 aa) fasta scores: E(): 3.1e-134, 29.53% id in 4320 aa, and to Aeromonas salmonicida Rtx protein Asx SWALL:Q9L800 (EMBL:AF218037) (2747 aa) fasta scores: E(): 1.3e-47, 28.2% id in 2822 aa.
  
  
 0.628
ECA0943
Similar to Escherichia coli f15 P-fimbriae major subunit precursor FfiA SWALL:P71218 (EMBL:Y08929) (168 aa) fasta scores: E(): 2.8e-17, 38.5% id in 174 aa, and to Serratia marcescens fimbria A protein precursor SmfA SWALL:FMA_SERMA (SWALL:P13421) (174 aa) fasta scores: E(): 1.3e-16, 39.34% id in 183 aa.
  
  
 0.623
ECA0942
Putative outer membrane usher protein; Similar to Photorhabdus luminescens MrfC SWALL:Q93MT4 (EMBL:AF396083) (851 aa) fasta scores: E(): 6.4e-137, 43.95% id in 810 aa, and to Proteus mirabilis outer membrane usher protein PmfC precursor pmfC SWALL:PMFC_PROMI (SWALL:P53514) (828 aa) fasta scores: E(): 3e-132, 42.75% id in 807 aa, and to Escherichia coli outer membrane usher protein PapC SWALL:PAPC_ECOLI (SWALL:P07110) (836 aa) fasta scores: E(): 1.6e-126, 43.34% id in 849 aa.
   
  
 0.597
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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