STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hecA2Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:P94772 (EMBL:AF501263) (3848 aa) fasta scores: E(): 7.2e-116, 36.39% id in 4407 aa. (4936 aa)    
Predicted Functional Partners:
hecB
Putative hemolysin activator protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa.
 
 
 0.947
ECA0391
Putative activator or transporter protein of haemolysin-like protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis putative hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa.
 
 
 0.791
ECA2119
Hypothetical protein; No significant database matches.
       0.773
hecA1
Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:AAN38708 (EMBL:AF501263) (3848 aa) fasta scores: E(): 3.6e-110, 43.11% id in 1148 aa.
 
   
0.719
ECA4459
Similar to Yersinia pestis putative lipoprotein ypo2971 SWALL:Q8ZCL2 (EMBL:AJ414154) (118 aa) fasta scores: E(): 1.6e-25, 65.21% id in 115 aa, and to Ralstonia solanacearum probable lipoprotein rsp0674 or rs01775 SWALL:Q8XS07 (EMBL:AL646080) (125 aa) fasta scores: E(): 3.4e-17, 46.15% id in 117 aa.
  
     0.564
ECA4460
Similar to Yersinia pestis putative lipoprotein ypo2972 SWALL:Q8ZCL1 (EMBL:AJ414154) (223 aa) fasta scores: E(): 2.5e-65, 78.82% id in 222 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0045 SWALL:Q9I787 (EMBL:AE004444) (228 aa) fasta scores: E(): 6.8e-58, 73.68% id in 209 aa.
  
     0.519
ECA4458
Similar to Yersinia pestis putative lipoprotein ypo2970 or y1514 SWALL:Q8ZCL3 (EMBL:AJ414154) (218 aa) fasta scores: E(): 2.1e-56, 69.58% id in 217 aa, and to Ralstonia solanacearum probable lipoprotein rsp0675 or rs01774 SWALL:Q8XS06 (EMBL:AL646080) (223 aa) fasta scores: E(): 5.9e-47, 59.09% id in 220 aa.
  
     0.509
ECA3552
Similar to Prevotella ruminicola polygalacturonase SWALL:Q9WXE7 (EMBL:AB022865) (494 aa) fasta scores: E(): 3.9e-17, 23.87% id in 423 aa, and to Agrobacterium tumefaciens polygalacturonase atu4560 or agr_l_619 SWALL:Q8U794 (EMBL:AE009384) (453 aa) fasta scores: E(): 2.8e-56, 36.03% id in 444 aa; Belongs to the glycosyl hydrolase 28 family.
  
    0.449
ECA3075
Putative fimbrial chaperone; Similar to Pseudomonas aeruginosa probable pili assembly chaperone pa4651 SWALL:Q9HVE1 (EMBL:AE004879) (262 aa) fasta scores: E(): 1.3e-45, 49.78% id in 237 aa, and to Pseudomonas putida type 1 pili usher pathway chaperone CsuC or pp2361 SWALL:AAN67974 (EMBL:AE016782) (264 aa) fasta scores: E(): 8.6e-40, 45.6% id in 239 aa.
  
  
 0.416
ECA1947
Putative sugar-binding periplasmic protein (pseudogene); 1 probable transmembrane helix predicted for ECA1945 by TMHMM2.0 at aa 34-56.
  
     0.402
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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