STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2122Probable integrase/recombinase (partial); Partial CDS. Similar to the C-terminal regions of several including Photorhabdus luminescens Int SWALL:AAN64203 (EMBL:AY144117) (465 aa) fasta scores: E(): 0.0021, 44.23% id in 52 aa, and to Ralstonia solanacearum probable integrase/recombinase protein rsp0090 or rs05531 SWALL:Q8XTL6 (EMBL:AL646076) (347 aa) fasta scores: E(): 0.0064, 56.75% id in 37 aa. (63 aa)    
Predicted Functional Partners:
ECA2120
Hypothetical protein; No significant database matches.
       0.572
ECA2121
Conserved hypothetical protein; Similar to Yersinia pestis hypothetical y0261 SWALL:Q8CLT6 (EMBL:AE013626) (74 aa) fasta scores: E(): 5.8e-07, 62.22% id in 45 aa, and to Enterococcus faecalis V583 hypothetical protein SWALL:AAO82028 (EMBL:AE016954) (72 aa) fasta scores: E(): 0.9, 37.83% id in 37 aa.
       0.572
ECA2123
Hypothetical protein; No significant database matches.
       0.529
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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