STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2125Hypothetical protein; No significant database matches. (164 aa)    
Predicted Functional Partners:
ECA2126
Similar to Listeria monocytogenes hypothetical protein Lmo1120 SWALL:Q8Y7Z9 (EMBL:AL591977) (138 aa) fasta scores: E(): 5.3e-24, 54.88% id in 133 aa.
    
  0.777
ECA2127
Similar to Listeria innocua hypothetical protein Lin1089 lin1089 SWALL:Q92CT2 (EMBL:AL596167) (145 aa) fasta scores: E(): 0.0006, 26.47% id in 136 aa, and to Listeria monocytogenes hypothetical protein Lmo1124 SWALL:Q8Y7Z5 (EMBL:AL591977) (145 aa) fasta scores: E(): 0.0071, 22.62% id in 137 aa.
       0.773
ECA2124
Hypothetical protein; No significant database matches.
       0.572
ECA0980
Autotransporter; Similar to Pseudomonas fluorescens serine protease homologue PspB SWALL:Q9ZNI5 (EMBL:AB015053) (1036 aa) fasta scores: E(): 1.6e-25, 28.66% id in 1106 aa, and to Serratia marcescens extracellular serine protease precursor SWALL:PRTT_SERMA (SWALL:P29805) (1045 aa) fasta scores: E(): 1.1e-16, 25.6% id in 1082 aa.
  
 
 0.525
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
  
 
  0.419
ECA3719
Putative phage-related protein; Similar to Bacteriophage Mu protein gp28 28 SWALL:VG28_BPMU (SWALL:Q9T1W6) (551 aa) fasta scores: E(): 9.8e-83, 47.23% id in 470 aa and Salmonella typhi hypothetical prophage related protein sty1615 SWALL:Q8Z6V1 (EMBL:AL627270) (531 aa) fasta scores: E(): 3.6e-189, 89.08% id in 513 aa.
   
    0.417
HecA2
Similar to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.6e-19, 50.5% id in 295 aa.
       0.407
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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