STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HecA2Similar to Escherichia coli O6 hypothetical protein c1207 SWALL:Q8FIZ4 (EMBL:AE016758) (537 aa) fasta scores: E(): 2.6e-19, 50.5% id in 295 aa. (335 aa)    
Predicted Functional Partners:
hecA1
Similar to Erwinia chrysanthemi hemolysin/hemagglutinin-like protein HecA precursor HecA SWALL:AAN38708 (EMBL:AF501263) (3848 aa) fasta scores: E(): 3.6e-110, 43.11% id in 1148 aa.
   
 0.842
hecB
Putative hemolysin activator protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 1e-144, 65.17% id in 537 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 6.5e-35, 27.27% id in 550 aa.
 
 
 0.833
ECA0391
Putative activator or transporter protein of haemolysin-like protein; Similar to Erwinia chrysanthemi HecB precursor HecB SWALL:P94771 (EMBL:AF501263) (558 aa) fasta scores: E(): 9.6e-40, 29.33% id in 559 aa, and to Yersinia pestis putative hemolysin activator protein ypo2491 or y1696 SWALL:Q8ZDR5 (EMBL:AJ414152) (562 aa) fasta scores: E(): 8.5e-141, 63.86% id in 559 aa, and to Proteus mirabilis hemolysin activator protein precursor HpmB SWALL:HLYB_PROMI (SWALL:P16465) (561 aa) fasta scores: E(): 2.8e-26, 26.52% id in 524 aa.
 
 
 0.779
flk
Cell division protein; Acts as a regulator of flagellar gene expression by modulating the protein level of the anti sigma factor FlgM upon sensing ring completion or hook elongation. Flk could inhibit FlgM secretion by acting as a braking system for the flagellar-associated type III secretion system.
  
     0.712
ECA4459
Similar to Yersinia pestis putative lipoprotein ypo2971 SWALL:Q8ZCL2 (EMBL:AJ414154) (118 aa) fasta scores: E(): 1.6e-25, 65.21% id in 115 aa, and to Ralstonia solanacearum probable lipoprotein rsp0674 or rs01775 SWALL:Q8XS07 (EMBL:AL646080) (125 aa) fasta scores: E(): 3.4e-17, 46.15% id in 117 aa.
  
     0.621
ECA2129
Hypothetical protein; No significant database matches.
       0.578
ECA4460
Similar to Yersinia pestis putative lipoprotein ypo2972 SWALL:Q8ZCL1 (EMBL:AJ414154) (223 aa) fasta scores: E(): 2.5e-65, 78.82% id in 222 aa, and to Pseudomonas aeruginosa hypothetical protein Pa0045 SWALL:Q9I787 (EMBL:AE004444) (228 aa) fasta scores: E(): 6.8e-58, 73.68% id in 209 aa.
  
     0.578
flgN
Flagella synthesis protein; Similar to Salmonella typhimurium, and Salmonella typhi flagella synthesis protein FlgN or stm1171 or sty1210 SWALL:FLGN_SALTY (SWALL:P37406) (140 aa) fasta scores: E(): 2.4e-14, 38.88% id in 144 aa, and to Yersinia enterocolitica flagella synthesis protein FlgN SWALL:FLGN_YEREN (SWALL:Q56854) (147 aa) fasta scores: E(): 6.2e-22, 46.85% id in 143 aa.
  
     0.557
ECA4458
Similar to Yersinia pestis putative lipoprotein ypo2970 or y1514 SWALL:Q8ZCL3 (EMBL:AJ414154) (218 aa) fasta scores: E(): 2.1e-56, 69.58% id in 217 aa, and to Ralstonia solanacearum probable lipoprotein rsp0675 or rs01774 SWALL:Q8XS06 (EMBL:AL646080) (223 aa) fasta scores: E(): 5.9e-47, 59.09% id in 220 aa.
  
     0.548
ECA3515
Putative lipoprotein; Similar to Pseudomonas syringae lipoprotein, putative pspto3094 SWALL:Q880Q8 (EMBL:AE016867) (153 aa) fasta scores: E(): 3e-09, 34.96% id in 143 aa, and to Xanthomonas campestris hypothetical protein Xcc3078 SWALL:Q8P692 (EMBL:AE012422) (146 aa) fasta scores: E(): 5.7e-12, 45.94% id in 111 aa.
  
     0.508
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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