STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2134Similar to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu2014 or agr_c_3652 SWALL:Q8UDV5 (EMBL:AE009153) (327 aa) fasta scores: E(): 7.6e-08, 23.3% id in 266 aa, and to Pseudomonas aeruginosa hypothetical protein Pa2377 SWALL:Q9I1A2 (EMBL:AE004664) (424 aa) fasta scores: E(): 8.8e-43, 39.38% id in 325 aa. (373 aa)    
Predicted Functional Partners:
afuA
ABC transporter iron-binding protein; Similar to Actinobacillus pleuropneumoniae AfuA protein afuA SWALL:Q57512 (EMBL:U05042) (346 aa) fasta scores: E(): 1.4e-97, 69.56% id in 345 aa, and to Escherichia coli O157:H7 periplasmic ferric iron-binding protein AfuA or z0460 or ecs0415 SWALL:Q8X5J1 (EMBL:AE005215) (343 aa) fasta scores: E(): 4.2e-115, 84.01% id in 344 aa.
  
   
 0.696
hrpW
Type III effector protein; Similar to Erwinia amylovora HrpW protein SWALL:O54508 (EMBL:Y13831) (447 aa) fasta scores: E(): 2.7e-36, 50.67% id in 448 aa, and to Pseudomonas syringae pv. maculicola type III effector hrpwpma SWALL:Q8RP12 (EMBL:AF458044) (424 aa) fasta scores: E(): 4.4e-28, 42.12% id in 470 aa.
  
   
 0.660
ECA2133
Hypothetical protein; No significant database matches.
       0.565
ECA3580
Conserved hypothetical protein; Similar to Yersinia pestis putative exported protein ypo2987 SWALL:Q8ZCJ8 (EMBL:AJ414154) (115 aa) fasta scores: E(): 0.012, 31.66% id in 120 aa, and to Escherichia coli protein FlxA or b1566 SWALL:FLXA_ECOLI (SWALL:P77609) (110 aa) fasta scores: E(): 0.94, 27.35% id in 117 aa. Also similar to ECA3581 (48.624% id. in 109 aa overlap).
      
 0.544
trpC
N-(5'-phosphoribosyl)anthranilate isomerase; Similar to Escherichia coli tryptophan biosynthesis protein TrpC [includes: indole-3-glycerol phosphate synthase trpc or b1262 SWALL:TRPC_ECOLI (SWALL:P00909) (452 aa) fasta scores: E(): 1.6e-121, 69.93% id in 449 aa.
      
 0.542
sfuA
Similar to Serratia marcescens iron(III)-binding periplasmic protein precursor SfuA SWALL:SFUA_SERMA (SWALL:P21408) (338 aa) fasta scores: E(): 1.3e-102, 82.84% id in 338 aa, and to Yersinia enterocolitica YfuA SWALL:Q56925 (EMBL:Z47200) (338 aa) fasta scores: E(): 4.7e-99, 80.17% id in 338 aa.
      
 0.542
ECA3087
Putative exported protein; Similar to Phytophthora parasitica necrosis-inducing protein Npp1 SWALL:Q9AT28 (EMBL:AF352031) (237 aa) fasta scores: E(): 1.9e-07, 31.1% id in 209 aa, and to Vibrio sp. CH-291 hypothetical 29.6 kDa protein SWALL:Q93IK1 (EMBL:AJ314791) (261 aa) fasta scores: E(): 9.1e-59, 55.98% id in 259 aa, and to Fusarium oxysporum f. sp. erythroxyli necrosis and ethylene inducing peptide Nep1 SWALL:O42737 (EMBL:AF036580) (253 aa) fasta scores: E(): 3.4e-06, 27.27% id in 231 aa.
  
     0.502
ECA3842
Putative isoflavone oxidoreductase; Similar to Cicer arietinum isoflavone reductase Ifr SWALL:IFR_CICAR (SWALL:Q00016) (318 aa) fasta scores: E(): 8.4e-10, 26.11% id in 291 aa, and to Salmonella typhi putative oxidoreductase sty1385 SWALL:Q8Z7A4 (EMBL:AL627270) (309 aa) fasta scores: E(): 3.6e-57, 54.88% id in 297 aa.
  
     0.479
ECA3946
Putative exported protein; No significant database matches.
      
 0.479
outD
Similar to Erwinia carotovora general secretion pathway protein D precursor OutD SWALL:GSPD_ERWCA (SWALL:P31701) (650 aa) fasta scores: E(): 3e-215, 92.76% id in 650 aa, and to Klebsiella pneumoniae general secretion pathway protein D precursor PulD SWALL:GSPD_KLEPN (SWALL:P15644) (660 aa) fasta scores: E(): 1.9e-173, 74.31% id in 654 aa.
      
 0.477
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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