STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2156ABC transporter, substrate binding protein; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.3e-09, 29.87% id in 231 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 3.4e-50, 50.16% id in 307 aa. (327 aa)    
Predicted Functional Partners:
ECA2154
Similar to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 5e-36, 39.6% id in 303 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-61, 57.86% id in 299 aa.
 
  0.886
ECA2155
Similar to Streptomyces coelicolor putative acetyltransferase sco3175 or sce87.26 SWALL:Q9RKB2 (EMBL:AL939115) (161 aa) fasta scores: E(): 2e-09, 36.09% id in 133 aa, and to Agrobacterium tumefaciens acetyltransferase atu3418 or agr_l_2808 SWALL:Q8UAF6 (EMBL:AE009272) (181 aa) fasta scores: E(): 3.9e-25, 50.29% id in 169 aa.
 
     0.870
ECA2153
Similar to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-57, 66.91% id in 266 aa, and to Rhizobium meliloti probable ABC transporter, ATP-binding protein ra1185 or sma2195 SWALL:Q92XQ9 (EMBL:AE007304) (254 aa) fasta scores: E(): 1.2e-48, 60.64% id in 249 aa.
 
  
  0.790
ECA0855
Similar to Rhizobium sp. TAL1145 mimosine transporter permease MidB SWALL:Q9EYT1 (EMBL:AF312768) (234 aa) fasta scores: E(): 6.8e-38, 52.52% id in 198 aa, and to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 1.8e-46, 46.2% id in 290 aa.
 
  0.730
ECA2158
Similar to Listeria monocytogenes hypothetical protein Lmo2343 SWALL:Q8Y4T9 (EMBL:AL591983) (440 aa) fasta scores: E(): 5.7e-99, 56.72% id in 439 aa, and to Pseudomonas syringae monooxygenase, ntaa/snaa/soxa family pspto2425 SWALL:AAO55934 (EMBL:AE016864) (448 aa) fasta scores: E(): 1.6e-98, 56.65% id in 436 aa.
 
    0.707
ECA2151
Amino acid ABC transporter ATP-binding protein (partial); Partial CDS. Similar to the C-terminal regions of several including Bradyrhizobium japonicum amino acid ABC transporter ATP-binding protein blr2226 SWALL:BAC47491 (EMBL:AP005943) (243 aa) fasta scores: E(): 4e-07, 57.69% id in 52 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 8.5e-07, 53.84% id in 52 aa.
 
  
  0.690
arcB
Similar to Escherichia coli, and Shigella flexneri aerobic respiration control sensor protein ArcB or b3210 or sf3250 SWALL:ARCB_ECOLI (SWALL:P22763) (778 aa) fasta scores: E(): 8.6e-180, 75.88% id in 788 aa, and to Yersinia pestis aerobic respiration control sensor/response regulatory protein ArcB SWALL:Q8ZB69 (EMBL:AJ414157) (778 aa) fasta scores: E(): 3.6e-190, 80.71% id in 788 aa.
   
 0.683
ECA2157
ABC transporter, substrate binding protein; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 2.1e-09, 28.69% id in 237 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 1.6e-49, 49.67% id in 304 aa.
 
    
0.550
ECA0854
ABC transporter, ATP-binding protein; Similar to Rhizobium sp. TAL1145 mimosine transporter ATP-binding protein MidC SWALL:Q9EYT0 (EMBL:AF312768) (265 aa) fasta scores: E(): 2.7e-49, 57.55% id in 245 aa, and to Corynebacterium glutamicum ABC-type transporter, ATPase component cgl1330 SWALL:Q8NQU4 (EMBL:AP005278) (250 aa) fasta scores: E(): 1.9e-50, 59.57% id in 235 aa.
 
 0.514
rpfA
Two-component sensor kinase and response regulator; Similar to Pectobacterium carotovorum subsp. carotovorum sensor/regulator protein RpfA SWALL:O08235 (EMBL:U62023) (929 aa) fasta scores: E(): 0, 92.88% id in 928 aa, and to Pectobacterium carotovorum subsp. carotovorum sensory kinase ExpS SWALL:O32556 (EMBL:Y13670) (928 aa) fasta scores: E(): 0, 95.36% id in 928 aa.
   
 0.434
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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