STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2158Similar to Listeria monocytogenes hypothetical protein Lmo2343 SWALL:Q8Y4T9 (EMBL:AL591983) (440 aa) fasta scores: E(): 5.7e-99, 56.72% id in 439 aa, and to Pseudomonas syringae monooxygenase, ntaa/snaa/soxa family pspto2425 SWALL:AAO55934 (EMBL:AE016864) (448 aa) fasta scores: E(): 1.6e-98, 56.65% id in 436 aa. (442 aa)    
Predicted Functional Partners:
ECA2157
ABC transporter, substrate binding protein; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 2.1e-09, 28.69% id in 237 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 1.6e-49, 49.67% id in 304 aa.
 
    0.872
hpaC
Similar to Escherichia coli 4-hydroxyphenylacetate 3-monooxygenase, reductase component HpaC SWALL:HPAC_ECOLI (SWALL:Q57501) (170 aa) fasta scores: E(): 1.8e-19, 41.66% id in 156 aa, and to Escherichia coli putative flavin:NADH reductase ycdh or b1007 SWALL:YCDH_ECOLI (SWALL:P75893) (164 aa) fasta scores: E(): 5e-35, 60.37% id in 159 aa; EC number 1.6.8.-.
 
  
 0.747
ECA2156
ABC transporter, substrate binding protein; Similar to Escherichia coli, and Escherichia coli O6 cystine-binding periplasmic protein precursor FliY or b1920 or c2335 SWALL:FLIY_ECOLI (SWALL:P39174) (266 aa) fasta scores: E(): 1.3e-09, 29.87% id in 231 aa, and to Agrobacterium tumefaciens ABC transporter, substrate binding protein atu3416 or agr_l_2811 SWALL:Q8UAF8 (EMBL:AE009272) (312 aa) fasta scores: E(): 3.4e-50, 50.16% id in 307 aa.
 
    0.708
ECA2155
Similar to Streptomyces coelicolor putative acetyltransferase sco3175 or sce87.26 SWALL:Q9RKB2 (EMBL:AL939115) (161 aa) fasta scores: E(): 2e-09, 36.09% id in 133 aa, and to Agrobacterium tumefaciens acetyltransferase atu3418 or agr_l_2808 SWALL:Q8UAF6 (EMBL:AE009272) (181 aa) fasta scores: E(): 3.9e-25, 50.29% id in 169 aa.
 
     0.686
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
 
 
 
 0.666
atsR-2
Similar to Pseudomonas aeruginosa putative sulfate ester binding protein AstR or pa0186 SWALL:O33416 (EMBL:Z48540) (353 aa) fasta scores: E(): 2.4e-58, 51.18% id in 338 aa, and to Pseudomonas putida AtsR WALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 9.8e-56, 49.85% id in 337 aa.
 
  
 0.617
ssuA
Similar to Escherichia coli putative aliphatic sulfonates binding protein precursor SsuA or b0936 SWALL:SSUA_ECOLI (SWALL:P75853) (319 aa) fasta scores: E(): 9e-83, 72.78% id in 305 aa.
 
  
 0.615
atsR
Putative sulfate ester transporter, periplasmic binding component; Similar to Pseudomonas putida AtsR SWALL:Q9WWU6 (EMBL:AF126201) (347 aa) fasta scores: E(): 2.2e-49, 45.8% id in 334 aa, and to Bacillus subtilis putative aliphatic sulfonates binding protein precursor SsuA SWALL:SSUA_BACSU (SWALL:P40400) (332 aa) fasta scores: E(): 9.5e-14, 26.68% id in 341 aa.
 
  
 0.580
ssuC
Similar to Escherichia coli putative aliphatic sulfonates transport permease protein SsuC or b0934 SWALL:SSUC_ECOLI (SWALL:P75851) (263 aa) fasta scores: E(): 2.5e-77, 78.59% id in 257 aa.
 
  
 0.560
ECA2154
Similar to Rhizobium meliloti putative ABC transporter, permease ra1186 or sma2197 SWALL:Q92XQ8 (EMBL:AE007304) (304 aa) fasta scores: E(): 5e-36, 39.6% id in 303 aa, and to Agrobacterium tumefaciens ABC transporter, nucleotide binding/ATPase protein atu3417 or agr_l_2810 SWALL:Q8UAF7 (EMBL:AE009272) (592 aa) fasta scores: E(): 3.1e-61, 57.86% id in 299 aa.
 
    0.512
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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