STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2161Putative luciferase-like monooxygenase; Similar to Agrobacterium tumefaciens hypothetical protein atu3421 or agr_l_2803 SWALL:Q8UAF3 (EMBL:AE009272) (335 aa) fasta scores: E(): 1.2e-59, 52.92% id in 325 aa, and to Bacillus subtilis hypothetical protein YtmO SWALL:YTMO_BACSU (SWALL:O34846) (334 aa) fasta scores: E(): 1.3e-44, 44.47% id in 326 aa. (326 aa)    
Predicted Functional Partners:
ECA2155
Similar to Streptomyces coelicolor putative acetyltransferase sco3175 or sce87.26 SWALL:Q9RKB2 (EMBL:AL939115) (161 aa) fasta scores: E(): 2e-09, 36.09% id in 133 aa, and to Agrobacterium tumefaciens acetyltransferase atu3418 or agr_l_2808 SWALL:Q8UAF6 (EMBL:AE009272) (181 aa) fasta scores: E(): 3.9e-25, 50.29% id in 169 aa.
     0.527
ECA2162
Similar to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9L910 (EMBL:AF188737) (172 aa) fasta scores: E(): 3.2e-32, 50.29% id in 167 aa, and to Shewanella oneidensis conserved hypothetical protein so1764 SWALL:AAN54818 (EMBL:AE015620) (171 aa) fasta scores: E(): 8.2e-25, 43.97% id in 166 aa.
       0.515
ECA2160
Putative peptidase; Similar to Zymomonas mobilis amino acid amido hydrolase SWALL:Q9FDK6 (EMBL:AF212041) (380 aa) fasta scores: E(): 2.3e-79, 55.93% id in 379 aa, and to Bacillus subtilis hypothetical protein yxep yxep or lp9H SWALL:YXEP_BACSU (SWALL:P54955) (380 aa) fasta scores: E(): 3.7e-69, 48.41% id in 378 aa.
 
    0.507
ECA2158
Similar to Listeria monocytogenes hypothetical protein Lmo2343 SWALL:Q8Y4T9 (EMBL:AL591983) (440 aa) fasta scores: E(): 5.7e-99, 56.72% id in 439 aa, and to Pseudomonas syringae monooxygenase, ntaa/snaa/soxa family pspto2425 SWALL:AAO55934 (EMBL:AE016864) (448 aa) fasta scores: E(): 1.6e-98, 56.65% id in 436 aa.
 
  
 0.498
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
     
 0.479
osmC
Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa.
 
     0.447
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.438
ssuD
Alkanesulfonate monooxygenase; Catalyzes the desulfonation of aliphatic sulfonates. Belongs to the SsuD family.
 
  
 0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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