STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2162Similar to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9L910 (EMBL:AF188737) (172 aa) fasta scores: E(): 3.2e-32, 50.29% id in 167 aa, and to Shewanella oneidensis conserved hypothetical protein so1764 SWALL:AAN54818 (EMBL:AE015620) (171 aa) fasta scores: E(): 8.2e-25, 43.97% id in 166 aa. (168 aa)    
Predicted Functional Partners:
ECA2161
Putative luciferase-like monooxygenase; Similar to Agrobacterium tumefaciens hypothetical protein atu3421 or agr_l_2803 SWALL:Q8UAF3 (EMBL:AE009272) (335 aa) fasta scores: E(): 1.2e-59, 52.92% id in 325 aa, and to Bacillus subtilis hypothetical protein YtmO SWALL:YTMO_BACSU (SWALL:O34846) (334 aa) fasta scores: E(): 1.3e-44, 44.47% id in 326 aa.
       0.515
ECA1474
Conserved hypothetical protein; Similar to Escherichia coli, and Escherichia coli O157:H7 hypothetical protein year or b1797 or z2839 or ecs2506 SWALL:YEAR_ECOLI (SWALL:P76248) (119 aa) fasta scores: E(): 3.1e-30, 66.66% id in 105 aa, and to Salmonella typhi hypothetical protein Sty1850 SWALL:Q8Z6D6 (EMBL:AL627271) (120 aa) fasta scores: E(): 5.8e-30, 65.71% id in 105 aa.
  
     0.479
ECA2242
Conserved hypothetical protein; Antitoxin component of a type II toxin-antitoxin (TA) system.
  
     0.423
iutA
Similar to Escherichia coli ferric aerobactin receptor precursor IutA SWALL:IUTA_ECOLI (SWALL:P14542) (732 aa) fasta scores: E(): 0, 75.85% id in 733 aa, and to Shigella boydii IutA SWALL:Q93PE2 (EMBL:AF335540) (732 aa) fasta scores: E(): 0, 75.44% id in 733 aa.
  
     0.416
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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