STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ascGAsc operon repressor; Similar to Escherichia coli cryptic asc operon repressor AscG or b2714 SWALL:ASCG_ECOLI (SWALL:P24242) (336 aa) fasta scores: E(): 7.3e-78, 64.34% id in 331 aa. (347 aa)    
Predicted Functional Partners:
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
 
 0.592
ccmF
Similar to Escherichia coli cytochrome C-type biogenesis protein CcmF or b2196 SWALL:CCMF_ECOLI (SWALL:P33927) (647 aa) fasta scores: E(): 1.2e-198, 74% id in 650 aa.
      
 0.543
ECA4433
Pts system, cellobiose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri PTS system, cellobiose-specific IIa component celc or b1736 or c2135 or z2766 or ecs2442 or sf1490 SWALL:PTCA_ECOLI (SWALL:P17335) (116 aa) fasta scores: E(): 8e-14, 47.47% id in 99 aa.
      
 0.543
ECA4434
PTS system, IIbc component; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
      
 0.543
ECA4435
Similar to Bacillus subtilis PTS system, lichenan-specific IIb component LicB or CelA SWALL:PTCB_BACSU (SWALL:P46318) (102 aa) fasta scores: E(): 1.5e-11, 48.95% id in 96 aa, and to Vibrio cholerae PTS system, cellobiose-specific iib component vc1281 SWALL:Q9KSH5 (EMBL:AE004207) (101 aa) fasta scores: E(): 4.4e-17, 53.46% id in 101 aa.
      
 0.543
crp
Cyclic AMP receptor protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri catabolite gene activator Crp or Cap or Csm or b3357 or c4132 or z4718 or ecs4208 or sf3376 SWALL:CRP_ECOLI (SWALL:P03020) (210 aa) fasta scores: E(): 6.2e-78, 99.04% id in 210 aa, and to Pectobacterium carotovorum subsp. carotovorum CrP SWALL:Q8KJ23 (EMBL:AB090359) (210 aa) fasta scores: E(): 4.6e-78, 99.04% id in 210 aa, and to Erwinia chrysanthemi Crp regulatory protein CrP SWALL:O07097 (EMBL:X89443) (210 aa) fasta scores: E(): 7.2e-77, 97.14% id in 210 aa.
    
 
 0.528
hyfH
Similar to Escherichia coli hydrogenase-4 component H HyfH or b2488 SWALL:HYFH_ECOLI (SWALL:P77423) (181 aa) fasta scores: E(): 3.7e-39, 61.44% id in 166 aa.
      
 0.478
hypC
Hydrogenase isoenzymes formation protein; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hydrogenase isoenzymes formation protein HypC or b2728 or c3288 or z4037 or ecs3584 or sf2745 SWALL:HYPC_ECOLI (SWALL:P24191) (90 aa) fasta scores: E(): 5.9e-22, 64.83% id in 91 aa.
      
 0.477
ECA1849
GntR-family transcriptional regulator; Similar to Escherichia coli fatty acyl responsive regulator farr or g30 or b0730 SWALL:FARR_ECOLI (SWALL:P13669) (240 aa) fasta scores: E(): 6e-25, 33.19% id in 235 aa, and to Shigella flexneri putative transcriptional regulator yidp or sf3779 SWALL:AAN45221 (EMBL:AE015385) (224 aa) fasta scores: E(): 1.8e-45, 54.01% id in 224 aa.
  
     0.439
ascF
Similar to Escherichia coli PTS system enzyme, arbutin-, cellobiose-, and salicin-specific iiabc component ascf or b2715 SWALL:PTDA_ECOLI (SWALL:P24241) (485 aa) fasta scores: E(): 4.8e-135, 80.25% id in 471 aa.
     
 0.415
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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