STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2173Conserved hypothetical protein; Similar to Xylella fastidiosa outer membrane protein xf1739 SWALL:Q9PCN9 (EMBL:AE003997) (385 aa) fasta scores: E(): 1.2e-61, 43.09% id in 355 aa, and to Xanthomonas axonopodis hypothetical protein Xac0250 SWALL:Q8PQS2 (EMBL:AE011649) (351 aa) fasta scores: E(): 1.5e-45, 38.16% id in 338 aa. (354 aa)    
Predicted Functional Partners:
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.711
ECA0373
Similar to Salmonella typhi hypothetical protein sty3451 SWALL:Q8Z3I6 (EMBL:AL627278) (211 aa) fasta scores: E(): 2.2e-41, 55.76% id in 208 aa, and to Escherichia coli O157:H7 hypothetical protein YraR SWALL:Q8XAA0 (EMBL:AE005544) (226 aa) fasta scores: E(): 2.7e-41, 54.8% id in 208 aa.
 
    0.618
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
  
 0.496
ECA2172
Putative exported protein; No significant database matches.
       0.424
ECA1205
Similar to Yersinia pestis putative membrane protein ypo1221 or y2967 SWALL:Q8ZGR2 (EMBL:AJ414147) (384 aa) fasta scores: E(): 1.1e-95, 69.16% id in 373 aa, and to Bradyrhizobium japonicum Blr6253 protein blr6253 SWALL:BAC51518 (EMBL:AP005957) (436 aa) fasta scores: E(): 8.5e-59, 47.76% id in 381 aa.
  
     0.414
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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