STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2175Putative exported protein; Similar to Rhizobium leguminosarum urease-associated hypothetical protein SWALL:Q8RPY4 (EMBL:AF347070) (135 aa) fasta scores: E(): 1.3e-07, 31.2% id in 125 aa, and to Agrobacterium tumefaciens hypothetical protein atu2403 or agr_c_4360 SWALL:Q8UCT0 (EMBL:AE009188) (141 aa) fasta scores: E(): 2.8e-07, 29.13% id in 127 aa. (132 aa)    
Predicted Functional Partners:
ECA2176
Hypothetical protein; No significant database matches.
       0.769
ECA2174
Similar to Pseudomonas syringae conserved hypothetical protein pspto5207 SWALL:AAO58633 (EMBL:AE016874) (131 aa) fasta scores: E(): 1.1, 28.57% id in 77 aa.
       0.550
ECA4198
Putative exported phosphatase; Similar to Pseudomonas syringae phytase PhyM SWALL:AAN77879 (EMBL:AY156083) (428 aa) fasta scores: E(): 3.4e-77, 48.73% id in 433 aa, and to Escherichia coli glucose-1-phosphatase precursor Agp or b1002 SWALL:AGP_ECOLI (SWALL:P19926) (413 aa) fasta scores: E(): 1.5e-31, 31.08% id in 415 aa.
  
     0.481
ECA2016
Similar to Rhizobium loti hypothetical protein Mlr7774 SWALL:Q984Z9 (EMBL:AP003012) (263 aa) fasta scores: E(): 7.7e-06, 25.4% id in 248 aa.
  
     0.474
ECA1934
Similar to Yersinia pestis putative lipoprotein ypo2371 SWALL:Q8ZE18 (EMBL:AJ414152) (104 aa) fasta scores: E(): 1.1e-16, 53.33% id in 105 aa, and to Yersinia enterocolitica hypothetical protein SWALL:YOR4_YEREN (SWALL:P28837) (101 aa) fasta scores: E(): 2.1e-15, 51.54% id in 97 aa.
  
     0.449
ECA1766
Similar to Anabaena sp. hypothetical protein Alr2015 SWALL:Q8YVG3 (EMBL:AP003587) (143 aa) fasta scores: E(): 3.7e-15, 38.93% id in 131 aa, and to Bradyrhizobium japonicum Blr7631 protein blr7631 SWALL:BAC52896 (EMBL:AP005962) (172 aa) fasta scores: E(): 3.2e-13, 43.26% id in 141 aa.
  
     0.437
ECA0673
Similar to Yersinia pestis putative DNA binding protein ypo0883 SWALL:Q8ZHK8 (EMBL:AJ414145) (120 aa) fasta scores: E(): 3.5e-14, 39.51% id in 124 aa, and to Bacteriophage phiE125 gp68 68 SWALL:Q8W6N2 (EMBL:AF447491) (128 aa) fasta scores: E(): 0.053, 28.84% id in 104 aa.
 
     0.409
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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