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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2185Putative membrane protein; Similar to Shigella flexneri orf, conserved hypothetical protein sf1208 SWALL:AAN42821 (EMBL:AE015147) (92 aa) fasta scores: E(): 5e-21, 57.14% id in 91 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein ychh or b1205 or c1663 or z1976 or ecs1710 SWALL:YCHH_ECOLI (SWALL:P31807) (92 aa) fasta scores: E(): 5.8e-21, 57.14% id in 91 aa. (89 aa)    
Predicted Functional Partners:
ECA2883
Similar to Yersinia pestis hypothetical protein Ypo1864 SWALL:Q8ZF54 (EMBL:AJ414150) (74 aa) fasta scores: E(): 2.3e-16, 67.56% id in 74 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein yecf or stm1949 or sty2157 SWALL:Q8XEK4 (EMBL:AE008786) (74 aa) fasta scores: E(): 7.4e-16, 62.16% id in 74 aa.
  
     0.771
ECA0045
Putative virulence-associated outer membrane protein; Similar to Salmonella typhimurium resistance to complement killing Rck or pslt009 SWALL:Q04817 (EMBL:L08613) (185 aa) fasta scores: E(): 7.9e-27, 44.68% id in 188 aa, and to Salmonella typhimurium virulence membrane protein PagC precursor or stm1246 SWALL:PAGC_SALTY (SWALL:P23988) (185 aa) fasta scores: E(): 3.5e-26, 45.05% id in 182 aa.
  
     0.762
ECA4363
Similar to Yersinia pestis putative membrane protein ypo3996 SWALL:Q8ZA24 (EMBL:AJ414160) (671 aa) fasta scores: E(): 4.1e-57, 47.29% id in 406 aa, and to Escherichia coli O6 protein yhjk yhjk or c4341 SWALL:AAN82777 (EMBL:AE016768) (662 aa) fasta scores: E(): 3.8e-47, 41.35% id in 399 aa.
  
     0.760
ECA0637
Similar to Escherichia coli hypothetical protein YqjK SWALL:YQJK_ECOLI (SWALL:Q47710) (99 aa) fasta scores: E(): 1.5e-17, 47.36% id in 95 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein YqjK SWALL:Q8XGR1 (EMBL:AE008848) (99 aa) fasta scores: E(): 4.6e-17, 45.26% id in 95 aa.
  
     0.757
ECA2740
Similar to Yersinia pestis hypothetical protein ypo1269 or y2914 SWALL:AAM86465 (EMBL:AJ414147) (114 aa) fasta scores: E(): 5e-30, 63.15% id in 114 aa, and to Escherichia coli, Escherichia coli O6, and Shigella flexneri hypothetical protein yejg or b2181 or c2718 or sf2268 SWALL:YEJG_ECOLI (SWALL:P33917) (114 aa) fasta scores: E(): 1.4e-27, 62.28% id in 114 aa.
  
     0.757
cpxP
Putative stress resistance protein; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri periplasmic protein cpxp precursor CpxP or b3913/b3914 or c4865 or sf3992 SWALL:CPXP_ECOLI (SWALL:P32158) (166 aa) fasta scores: E(): 6.2e-20, 50% id in 140 aa.
  
     0.755
ECA2203
Similar to Yersinia pestis putative exported protein ypo2305 or y2136 SWALL:Q8ZE77 (EMBL:AJ414151) (317 aa) fasta scores: E(): 2.4e-78, 69.9% id in 319 aa, and to Shigella flexneri orf, conserved hypothetical protein sf1625 SWALL:AAN43208 (EMBL:AE015183) (314 aa) fasta scores: E(): 8.2e-74, 67.82% id in 317 aa.
  
     0.752
panZ
Putative acetyltransferase; Controls both the activation and catalytic activity of PanD in a coenzyme A (CoA)-dependent fashion; Belongs to the PanZ/PanM family.
  
     0.745
atpI
ATP synthase protein I; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri ATP synthase protein I AtpI or UncI or b3739 or c4667 or sf3819 SWALL:ATPZ_ECOLI (SWALL:P03808) (125 aa) fasta scores: E(): 5.7e-21, 57.02% id in 121 aa.
  
     0.745
ECA1368
Putative membrane protein; Similar to Erwinia chrysanthemi YbgE protein SWALL:Q937K8 (EMBL:AJ297885) (97 aa) fasta scores: E(): 1.7e-31, 79.16% id in 96 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein YbgE or b0735 or c0814 or z0903 or ecs0770 or sf0562 SWALL:YBGE_ECOLI (SWALL:P37343) (97 aa) fasta scores: E(): 4.2e-26, 63.54% id in 96 aa.
  
     0.744
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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