STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnpATransposase transposon tn1721 (partial); Partial CDS. Similar to the C-terminal regions of many transposases including Escherichia coli transposase for transposon Tn1721 TnpA SWALL:TNP9_ECOLI (SWALL:P51565) (988 aa) fasta scores: E(): 6.4e-25, 83.75% id in 80 aa. (84 aa)    
Predicted Functional Partners:
ECA2195
Similar to the C-terminal regions of many including Escherichia coli transposase insg for insertion sequence element IS4 InsG or b4278 SWALL:INSG_ECOLI (SWALL:P03835) (442 aa) fasta scores: E(): 1.8e-36, 69.23% id in 143 aa.
       0.773
ECA2198
Hypothetical protein (partial); Similar to the C-terminal region of Xanthomonas campestris VirB6 protein or xcc3294 SWALL:Q8P5P2 (EMBL:AE012446) (373 aa) fasta scores: E(): 0.14, 31.19% id in 109 aa.
       0.572
grxA
Glutaredoxin 1; Similar to Escherichia coli, and Shigella flexneri glutaredoxin 1 GrxA or Grx or b0849 or sf0802 SWALL:GLR1_ECOLI (SWALL:P00277) (85 aa) fasta scores: E(): 6e-21, 69.88% id in 83 aa.
      
 0.544
ECA4212
Thioredoxin; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1e-36, 88.78% id in 107 aa; Belongs to the thioredoxin family.
      
 0.544
rpsL
30S ribosomal subunit protein S12; With S4 and S5 plays an important role in translational accuracy.
      
 0.543
scrB
Sucrose-6-phosphate hydrolase; Enables the bacterium to metabolize sucrose as a sole carbon source; Belongs to the glycosyl hydrolase 32 family.
      
 0.542
ECA1267
Thioredoxin; The N-terminal region of this CDS is similar to several thioredoxinx including Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, Salmonella typhimurium, Salmonella typhi, and Shigella flexneri thioredoxin 1 SWALL:THIO_ECOLI (SWALL:P00274) (108 aa) fasta scores: E(): 1.7e-14, 46.22% id in 106 aa, and to Thiobacillus ferrooxidans thioredoxin trxA SWALL:THIO_THIFE (SWALL:P52233) (108 aa) fasta scores: E(): 2.3e-14, 45.79% id in 107 aa.
      
 0.540
ECA2199
Putative lipoprotein; Similar to Xanthomonas campestris hypothetical protein Xcc3128 SWALL:Q8P649 (EMBL:AE012428) (182 aa) fasta scores: E(): 1.4e-09, 35.35% id in 181 aa.
       0.482
ECA2200
Putative exported protein; Similar to Xanthomonas axonopodis hypothetical protein Xac0467 SWALL:Q8PQ61 (EMBL:AE011674) (265 aa) fasta scores: E(): 3.8e-27, 40.09% id in 217 aa.
       0.482
tauB
Similar to Escherichia coli taurine transport ATP-binding protein TauB or SsiB or b0366 SWALL:TAUB_ECOLI (SWALL:Q47538) (255 aa) fasta scores: E(): 1.3e-36, 45.18% id in 239 aa.
      
 0.478
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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