STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2209Putative oxidoreductase; Similar to Oceanobacillus iheyensis hypothetical conserved protein ob2083 SWALL:BAC14039 (EMBL:AP004600) (426 aa) fasta scores: E(): 1.9e-114, 62.97% id in 424 aa, and to Rhizobium meliloti putative oxidoreductase protein r00123 or smc04129 SWALL:Q92T57 (EMBL:AL591782) (433 aa) fasta scores: E(): 2.9e-46, 41.68% id in 427 aa. (431 aa)    
Predicted Functional Partners:
ECA4303
Putative exported protein; Similar to Streptomyces coelicolor hypothetical protein sco1536 or scl2.26C SWALL:Q9L273 (EMBL:AL939109) (822 aa) fasta scores: E(): 4e-150, 48.64% id in 847 aa, and to Bacillus subtilis YetA protein SWALL:O31530 (EMBL:Z99107) (857 aa) fasta scores: E(): 4.1e-50, 34.15% id in 887 aa.
  
     0.747
ECA1396
Putative exported protein; Similar to Agrobacterium tumefaciens hypothetical protein atu4376 or agr_l_982 SWALL:Q8U7S3 (EMBL:AE009366) (284 aa) fasta scores: E(): 2e-44, 43.5% id in 285 aa, and to Rhizobium meliloti hypothetical protein r01924 or smc04254 SWALL:Q92P69 (EMBL:AL591788) (253 aa) fasta scores: E(): 6.9e-22, 32.63% id in 239 aa.
 
  
 0.690
ECA3178
Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor GalA or GanA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 3.5e-35, 33.98% id in 409 aa, and to Yersinia pestis putative galactosidase ypo0853 or y3238 SWALL:Q8ZHN7 (EMBL:AJ414145) (400 aa) fasta scores: E(): 2.1e-117, 72.51% id in 393 aa.
  
     0.687
ECA2210
Similar to Erwinia chrysanthemi periplasmic binding protein precursor TogB SWALL:Q93KB7 (EMBL:AJ305144) (430 aa) fasta scores: E(): 5.9e-79, 49.29% id in 428 aa, and to Yersinia pestis putative sugar-binding protein ypo1719 or TogB or y1881 SWALL:AAM85448 (EMBL:AJ414150) (430 aa) fasta scores: E(): 2.2e-79, 49.52% id in 422 aa. Also similar to ECA2406(TogB) (50.117% id) and to ECA3551 (47.442% id).
 
   
 0.685
ECA2140
Putative oxidoreductase; Similar to Oceanobacillus iheyensis hypothetical protein ob3401 SWALL:BAC15357 (EMBL:AP004604) (363 aa) fasta scores: E(): 3.5e-64, 49.69% id in 328 aa, and to Agrobacterium tumefaciens oxidoreductase atu3965 or agr_l_1780 SWALL:Q8U8X3 (EMBL:AE009327) (338 aa) fasta scores: E(): 4.3e-62, 50.75% id in 333 aa.
  
     0.670
ECA0852
Putative exported plant proteoglycan hydrolase; Similar to Pseudomonas fluorescens arabinogalactan endo-1,4-beta-galactosidase precursor gala or ganA SWALL:GANA_PSEFL (SWALL:P48841) (376 aa) fasta scores: E(): 1.2e-16, 33.53% id in 325 aa, and to Thermotoga maritima arabinogalactan endo-1,4-beta-galactosidase, putative tm1201 SWALL:Q9X0S8 (EMBL:AE001777) (606 aa) fasta scores: E(): 1.6e-33, 36.2% id in 348 aa, and to Aspergillus aculeatus arabinogalactan endo-1,4-beta-galactosidase precursor gal1 SWALL:GANA_ASPAC (SWALL:P48842) (350 aa) fasta scores: E(): 2.2e-15, 30.69% id in 329 aa.
  
     0.667
pbg
Beta-galactosidase; Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa.
 
    0.661
ECA1457
Similar to Yersinia pestis putative thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; Belongs to the TPP enzyme family.
  
  
 0.597
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
  
  
 0.588
ECA3112
Pectate lyase; Similar to Bacillus sp pectate lyase PelK SWALL:BAA05383 (EMBL:D26349) (420 aa) fasta scores: E(): 2.7e-35, 35.16% id in 472 aa, and to Erwinia chrysanthemi pectate lyase a precursor PelA SWALL:PELA_ERWCH (SWALL:P29155) (393 aa) fasta scores: E(): 1.1e-27, 31.9% id in 442 aa.
  
     0.583
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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