STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2213Similar to Vibrio vulnificus conserved hypothetical protein vv12933 SWALL:AAO11265 (EMBL:AE016806) (255 aa) fasta scores: E(): 8.4e-49, 49.37% id in 241 aa, and to Pseudomonas putida conserved hypothetical protein pp2735 SWALL:AAN68343 (EMBL:AE016784) (269 aa) fasta scores: E(): 8.5e-32, 41.39% id in 244 aa. (241 aa)    
Predicted Functional Partners:
ECA2212
Similar to Vibrio cholerae cyclopropane-fatty-acyl-phospholipid synthase vc1122 SWALL:Q9KSY4 (EMBL:AE004192) (432 aa) fasta scores: E(): 3e-82, 55.76% id in 364 aa, and to Shewanella oneidensis cyclopropane-fatty-acyl-phospholipid synthase Cfa or so3379 SWALL:AAN56377 (EMBL:AE015774) (418 aa) fasta scores: E(): 3.1e-77, 49.75% id in 408 aa.
  
 0.995
ECA2214
Putative amine oxidoreductase; Similar to Vibrio cholerae hypothetical protein Vc1120 SWALL:Q9KSY6 (EMBL:AE004192) (426 aa) fasta scores: E(): 7.9e-99, 58.33% id in 420 aa, and to Shewanella oneidensis conserved hypothetical protein so3381 SWALL:AAN56379 (EMBL:AE015774) (416 aa) fasta scores: E(): 9.4e-90, 56.25% id in 416 aa.
 
  
 0.960
ECA2216
Conserved hypothetical protein; Similar to Vibrio vulnificus putative transcriptional regulator vv12936 SWALL:Q8D8N5 (EMBL:AE016806) (139 aa) fasta scores: E(): 7.7e-20, 43.28% id in 134 aa, and to Pseudomonas syringae conserved hypothetical protein pspto1120 SWALL:AAO54649 (EMBL:AE016859) (140 aa) fasta scores: E(): 3.5e-17, 38.97% id in 136 aa.
 
   
 0.948
ECA2215
Putative short-chain dehydrogenase; Similar to Vibrio vulnificus dehydrogenase vv12935 SWALL:AAO11267 (EMBL:AE016806) (241 aa) fasta scores: E(): 2.9e-42, 50.84% id in 236 aa, and to Pseudomonas putida oxidoreductase, short-chain dehydrogenase/reductase family pp2737 SWALL:AAN68345 (EMBL:AE016784) (250 aa) fasta scores: E(): 3.7e-28, 42.21% id in 244 aa.
 
  
 0.942
ECA2692
Similar to Agrobacterium tumefaciens amine oxidase, flavin-containing atu1977 or agr_c_3599 SWALL:Q8UDY9 (EMBL:AE009150) (457 aa) fasta scores: E(): 3.3e-25, 27.16% id in 438 aa, and to Rhizobium loti hypothetical protein Mll8087 SWALL:Q984A4 (EMBL:AP003013) (448 aa) fasta scores: E(): 4.9e-26, 29.45% id in 421 aa.
 
  
 0.823
cfa
Similar to Escherichia coli, and Escherichia coli O6 cyclopropane-fatty-acyl-phospholipid synthase Cfa or CdfA or b1661 or c2055 SWALL:CFA_ECOLI (SWALL:P30010) (381 aa) fasta scores: E(): 2.7e-113, 68.75% id in 368 aa.
  
 0.799
ECA2211
Copper-zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
       0.610
ECA1585
Similar to Pseudomonas putida conserved hypothetical protein pp2732 SWALL:AAN68340 (EMBL:AE016784) (508 aa) fasta scores: E(): 1.6e-149, 66.86% id in 507 aa, and to Caulobacter crescentus hypothetical protein Cc0646 SWALL:Q9AAF5 (EMBL:AE005740) (509 aa) fasta scores: E(): 9.5e-105, 50.39% id in 502 aa.
 
   
 0.570
srfC
Putative virulence factor; Similar to Salmonella typhimurium SrfC or stm1595 SWALL:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 4.2e-23, 30.06% id in 795 aa, and to Yersinia pestis putative virulence factor y2123 SWALL:AAM85685 (EMBL:AE013815) (846 aa) fasta scores: E(): 2.9e-65, 55.12% id in 849 aa.
 
     0.495
phrB
Similar to Escherichia coli deoxyribodipyrimidine photolyase PhrB or Phr or b0708 SWALL:PHR_ECOLI (SWALL:P00914) (472 aa) fasta scores: E(): 5.3e-126, 62.84% id in 471 aa; Belongs to the DNA photolyase family.
 
    0.453
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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