STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2215Putative short-chain dehydrogenase; Similar to Vibrio vulnificus dehydrogenase vv12935 SWALL:AAO11267 (EMBL:AE016806) (241 aa) fasta scores: E(): 2.9e-42, 50.84% id in 236 aa, and to Pseudomonas putida oxidoreductase, short-chain dehydrogenase/reductase family pp2737 SWALL:AAN68345 (EMBL:AE016784) (250 aa) fasta scores: E(): 3.7e-28, 42.21% id in 244 aa. (235 aa)    
Predicted Functional Partners:
ECA2216
Conserved hypothetical protein; Similar to Vibrio vulnificus putative transcriptional regulator vv12936 SWALL:Q8D8N5 (EMBL:AE016806) (139 aa) fasta scores: E(): 7.7e-20, 43.28% id in 134 aa, and to Pseudomonas syringae conserved hypothetical protein pspto1120 SWALL:AAO54649 (EMBL:AE016859) (140 aa) fasta scores: E(): 3.5e-17, 38.97% id in 136 aa.
 
   
 0.962
ECA2213
Similar to Vibrio vulnificus conserved hypothetical protein vv12933 SWALL:AAO11265 (EMBL:AE016806) (255 aa) fasta scores: E(): 8.4e-49, 49.37% id in 241 aa, and to Pseudomonas putida conserved hypothetical protein pp2735 SWALL:AAN68343 (EMBL:AE016784) (269 aa) fasta scores: E(): 8.5e-32, 41.39% id in 244 aa.
 
  
 0.943
ECA2214
Putative amine oxidoreductase; Similar to Vibrio cholerae hypothetical protein Vc1120 SWALL:Q9KSY6 (EMBL:AE004192) (426 aa) fasta scores: E(): 7.9e-99, 58.33% id in 420 aa, and to Shewanella oneidensis conserved hypothetical protein so3381 SWALL:AAN56379 (EMBL:AE015774) (416 aa) fasta scores: E(): 9.4e-90, 56.25% id in 416 aa.
 
   
 0.938
ECA2212
Similar to Vibrio cholerae cyclopropane-fatty-acyl-phospholipid synthase vc1122 SWALL:Q9KSY4 (EMBL:AE004192) (432 aa) fasta scores: E(): 3e-82, 55.76% id in 364 aa, and to Shewanella oneidensis cyclopropane-fatty-acyl-phospholipid synthase Cfa or so3379 SWALL:AAN56377 (EMBL:AE015774) (418 aa) fasta scores: E(): 3.1e-77, 49.75% id in 408 aa.
 
   
 0.875
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
 0.825
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
 0.805
gltB
Similar to Escherichia coli glutamate synthase [NADPH] large chain precursor GltB or AspB SWALL:GLTB_ECOLI (SWALL:P09831) (1517 aa) fasta scores: E(): 0, 86.75% id in 1495 aa, and to Yersinia pestis glutamate synthase, large subunit GltB SWALL:AAM83722 (EMBL:AE013613) (1535 aa) fasta scores: E(): 0, 90.25% id in 1498 aa.
    
  0.755
ECA2211
Copper-zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
       0.610
ECA2692
Similar to Agrobacterium tumefaciens amine oxidase, flavin-containing atu1977 or agr_c_3599 SWALL:Q8UDY9 (EMBL:AE009150) (457 aa) fasta scores: E(): 3.3e-25, 27.16% id in 438 aa, and to Rhizobium loti hypothetical protein Mll8087 SWALL:Q984A4 (EMBL:AP003013) (448 aa) fasta scores: E(): 4.9e-26, 29.45% id in 421 aa.
 
   
 0.541
srfC
Putative virulence factor; Similar to Salmonella typhimurium SrfC or stm1595 SWALL:Q9KIJ8 (EMBL:AF231758) (714 aa) fasta scores: E(): 4.2e-23, 30.06% id in 795 aa, and to Yersinia pestis putative virulence factor y2123 SWALL:AAM85685 (EMBL:AE013815) (846 aa) fasta scores: E(): 2.9e-65, 55.12% id in 849 aa.
 
     0.525
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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