STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmCSimilar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa. (142 aa)    
Predicted Functional Partners:
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.
 
  
 0.629
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
  
  
 0.596
ECA0631
Conserved hypothetical protein; Similar to Escherichia coli O6 protein YjbJ SWALL:AAN83442 (EMBL:AE016770) (71 aa) fasta scores: E(): 1e-20, 76.05% id in 71 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein YjbJ SWALL:Q8XEL4 (EMBL:AE008898) (70 aa) fasta scores: E(): 5.4e-20, 77.14% id in 70 aa; Belongs to the UPF0337 (CsbD) family.
 
  
 0.543
ECA2211
Copper-zinc superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
 
  
 0.535
ECA0639
Similar to Yersinia pestis putative membrane protein ypo0570 SWALL:AAM87157 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.3e-22, 76.23% id in 101 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm3229 or sty3409 SWALL:Q8XEQ1 (EMBL:AE008848) (101 aa) fasta scores: E(): 9.6e-21, 71.28% id in 101 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjD SWALL:YQJD_ECOLI (SWALL:P42617) (101 aa) fasta scores: E(): 2.2e-20, 69.3% id in 101 aa.
   
  
 0.509
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
  
  
 0.504
ECA2844
Putative membrane protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yqae or b2666 or c3215 or z3965 or ecs3527 SWALL:YQAE_ECOLI (SWALL:P77240) (52 aa) fasta scores: E(): 8.5e-17, 82.69% id in 52 aa, and to Salmonella typhimurium, and Salmonella typhi putative yqae family transport protein yqae or stm2796 or sty2916 SWALL:Q8XF49 (EMBL:AE008827) (52 aa) fasta scores: E(): 6.7e-16, 82.35% id in 51 aa.
  
    0.495
ECA2383
Putative isochorismatase; Similar to Pseudomonas aeruginosa probable hydrolase pa1202 SWALL:Q9I4D6 (EMBL:AE004550) (205 aa) fasta scores: E(): 3.9e-25, 41.17% id in 204 aa, and to Pseudomonas syringae isochorismatase family protein pspto1009 SWALL:AAO54542 (EMBL:AE016859) (208 aa) fasta scores: E(): 5.3e-24, 38.91% id in 203 aa.
   
    0.491
speA
Biosynthetic arginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine.
      
 0.479
gltI
Similar to Escherichia coli glutamate/aspartate periplasmic binding protein precursor HltI or b0655 SWALL:GLTI_ECOLI (SWALL:P37902) (302 aa) fasta scores: E(): 1.5e-88, 78.8% id in 302 aa.
      
 0.478
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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