STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2230Similar to Escherichia coli O6 putative oxidoreductase c0409 SWALL:AAN78890 (EMBL:AE016756) (329 aa) fasta scores: E(): 3.6e-62, 56.27% id in 311 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 4.8e-55, 42.81% id in 369 aa. (372 aa)    
Predicted Functional Partners:
ECA2231
Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa.
       0.757
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
  
  
 0.462
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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