STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2231Similar to Escherichia coli O6 hypothetical protein ycjy c1801 SWALL:Q8FHQ8 (EMBL:AE016760) (310 aa) fasta scores: E(): 3.8e-49, 47.11% id in 295 aa, and to Vibrio parahaemolyticus hypothetical protein vp1677 SWALL:BAC59940 (EMBL:AP005078) (339 aa) fasta scores: E(): 1.9e-45, 46.23% id in 292 aa. (297 aa)    
Predicted Functional Partners:
ECA2230
Similar to Escherichia coli O6 putative oxidoreductase c0409 SWALL:AAN78890 (EMBL:AE016756) (329 aa) fasta scores: E(): 3.6e-62, 56.27% id in 311 aa, and to Oceanobacillus iheyensis NADH-dependent flavin oxidoreductase ob3315 SWALL:BAC15271 (EMBL:AP004604) (373 aa) fasta scores: E(): 4.8e-55, 42.81% id in 369 aa.
       0.757
ECA3135
Similar to Xanthomonas axonopodis hypothetical protein Xac2840 SWALL:Q8PIQ5 (EMBL:AE011925) (130 aa) fasta scores: E(): 5.5e-34, 69.29% id in 127 aa, and to Bradyrhizobium japonicum Bll4598 protein bll4598 SWALL:BAC49863 (EMBL:AP005951) (203 aa) fasta scores: E(): 5.9e-33, 66.41% id in 131 aa.
 
    0.707
ECA2232
Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.5e-69, 61.01% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 2.1e-64, 57.14% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
 
    0.694
fadB
Fatty oxidation complex alpha subunit [includes: enoyl-CoA hydratase; Involved in the aerobic and anaerobic degradation of long- chain fatty acids via beta-oxidation cycle. Catalyzes the formation of 3-oxoacyl-CoA from enoyl-CoA via L-3-hydroxyacyl-CoA. It can also use D-3-hydroxyacyl-CoA and cis-3-enoyl-CoA as substrate. In the C-terminal section; belongs to the 3-hydroxyacyl-CoA dehydrogenase family.
    
 0.682
fadJ
Putative fatty acid oxidation complex alpha subunit; Catalyzes the formation of a hydroxyacyl-CoA by addition of water on enoyl-CoA. Also exhibits 3-hydroxyacyl-CoA epimerase and 3- hydroxyacyl-CoA dehydrogenase activities; In the N-terminal section; belongs to the enoyl-CoA hydratase/isomerase family.
    
 0.682
fruK
1-phosphofructokinase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri 1-phosphofructokinase FruK or Fpk or b2168 or c2703 or z3426 or ecs3060 or sf2253 SWALL:K1PF_ECOLI (SWALL:P23539) (312 aa) fasta scores: E(): 7.8e-108, 90.7% id in 312 aa; Belongs to the carbohydrate kinase PfkB family.
   
    0.551
ECA1280
Putative phospholipase/Carboxylesterase family protein; Similar to Escherichia coli O6 hypothetical protein ypfh or c3001 SWALL:AAN81451 (EMBL:AE016764) (240 aa) fasta scores: E(): 9.1e-37, 50% id in 206 aa, and to Shigella flexneri orf, conserved hypothetical protein ypfh or sf2516 SWALL:AAN44019 (EMBL:AE015267) (240 aa) fasta scores: E(): 1.2e-36, 50% id in 206 aa.
     
 0.511
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
  
 0.504
ECA2922
Similar to Escherichia coli hypothetical transcriptional regulator ycjz or b1328 SWALL:YCJZ_ECOLI (SWALL:P77333) (299 aa) fasta scores: E(): 1e-73, 66.21% id in 296 aa, and to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.3e-54, 54.39% id in 296 aa.
 
    0.496
ECA3134
Similar to Yersinia pestis putative lysr-family transcriptional regulatory protein ptxr or ypo2807 or y1123 SWALL:Q8ZCZ5 (EMBL:AJ414153) (297 aa) fasta scores: E(): 4.2e-79, 68.47% id in 295 aa, and to Escherichia coli O6 hypothetical transcriptional regulator ycjz c0412 SWALL:Q8FKK6 (EMBL:AE016756) (322 aa) fasta scores: E(): 6.1e-77, 66.44% id in 295 aa.
 
    0.488
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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