STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2234Similar to Xanthomonas axonopodis hypothetical protein Xac2153 SWALL:Q8PKL8 (EMBL:AE011852) (196 aa) fasta scores: E(): 3.6e-35, 45.69% id in 186 aa, and to Saccharomyces cerevisiae hypothetical 22.0 kDa protein in hxt11-hxt8 intergenic region yjl217w or j0226 or hrc198 SWALL:YJV7_YEAST (SWALL:P40893) (198 aa) fasta scores: E(): 1.2e-33, 45.83% id in 192 aa. (199 aa)    
Predicted Functional Partners:
ECA2235
Putative transcriptional regulator; Similar to Pseudomonas putida conserved hypothetical protein pp2987 SWALL:AAN68595 (EMBL:AE016785) (187 aa) fasta scores: E(): 2.1e-33, 70.24% id in 121 aa, and to Rhizobium loti hypothetical protein Mll2592 SWALL:Q98I32 (EMBL:AP003000) (182 aa) fasta scores: E(): 6.4e-17, 49.56% id in 115 aa.
       0.732
ECA2233
Probable hydrolase; Similar to uncultured bacterium esterase SWALL:Q9KIU0 (EMBL:AF223648) (438 aa) fasta scores: E(): 5.5e-34, 42.48% id in 306 aa, and to Clostridium acetobutylicum carboxyl esterase, a/b hydrolase cap0097 SWALL:Q97TK4 (EMBL:AE001438) (299 aa) fasta scores: E(): 1e-42, 42.12% id in 292 aa.
       0.580
ECA4314
Putative exported protein; Similar to Yersinia pestis hypothetical y3253 SWALL:Q8CKN3 (EMBL:AE013927) (255 aa) fasta scores: E(): 2.6e-44, 48.56% id in 243 aa.
  
     0.538
ECA2232
Similar to Bradyrhizobium japonicum transcriptional regulatory protein blr5548 SWALL:BAC50813 (EMBL:AP005955) (297 aa) fasta scores: E(): 1.5e-69, 61.01% id in 295 aa, and to Ralstonia solanacearum probable transcription regulator protein rsp1471 or rs03073 SWALL:Q8XQ15 (EMBL:AL646085) (297 aa) fasta scores: E(): 2.1e-64, 57.14% id in 294 aa; Belongs to the LysR transcriptional regulatory family.
       0.518
ECA0615
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2430 SWALL:AAN68042 (EMBL:AE016783) (276 aa) fasta scores: E(): 1.1e-67, 56.72% id in 275 aa, and to Pseudomonas aeruginosa probable transcriptional regulator pa2917 SWALL:Q9HZT0 (EMBL:AE004718) (278 aa) fasta scores: E(): 2.1e-63, 53.65% id in 274 aa.
  
     0.416
ECA4249
ABC transporter periplasmic binding protein; Similar to Escherichia coli, and Escherichia coli O157:H7 maltose-binding periplasmic protein precursor MalE or b4034 or z5632 or ecs5017 SWALL:MALE_ECOLI (SWALL:P02928) (396 aa) fasta scores: E(): 0.00014, 26.87% id in 387 aa, and to Yersinia pestis putative ABC transporter periplasmic binding protein y2281 SWALL:AAM85840 (EMBL:AE013831) (360 aa) fasta scores: E(): 6.8e-13, 26.11% id in 337 aa.
  
     0.411
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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