STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2238Similar to Rhizobium loti hypothetical protein Msl2237 SWALL:Q98IV1 (EMBL:AP002999) (74 aa) fasta scores: E(): 2.4e-18, 67.64% id in 68 aa. (68 aa)    
Predicted Functional Partners:
ECA2239
Similar to Erwinia pyrifoliae conserved hypothetical protein SWALL:AAN04552 (EMBL:AY123045) (94 aa) fasta scores: E(): 2.6e-22, 66.31% id in 95 aa, and to Yersinia pestis hypothetical protein ypo1157 or y3025 SWALL:Q8ZGW6 (EMBL:AJ414146) (81 aa) fasta scores: E(): 2.7e-16, 63.51% id in 74 aa.
 
     0.595
ECA2240
Putative lipoprotein; Similar to Escherichia coli, Escherichia coli O157:H7, and Shigella flexneri hypothetical lipoprotein yddw precursor yddw or b1491 or z2217 or ecs2096 or sf1736 SWALL:YDDW_ECOLI (SWALL:P76130) (439 aa) fasta scores: E(): 1.2e-134, 77.33% id in 428 aa, and to Yersinia pestis putative lipoprotein ypo2538 or y1649 SWALL:Q8ZDM4 (EMBL:AJ414152) (427 aa) fasta scores: E(): 6.7e-102, 61.03% id in 426 aa.
       0.501
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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