STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ddcSimilar to Acinetobacter baumannii L-2,4-diaminobutyrate decarboxylase Ddc SWALL:DDC_ACIBA (SWALL:Q43908) (510 aa) fasta scores: E(): 3.1e-101, 54.06% id in 492 aa, and to Enterobacter aerogenes L-2,4-diaminobutyrate decarboxylase Ddc SWALL:Q9S0P8 (EMBL:AB032468) (490 aa) fasta scores: E(): 2.4e-161, 83.77% id in 487 aa. (505 aa)    
Predicted Functional Partners:
dat
Similar to Acinetobacter baumannii diaminobutyrate--2-oxoglutarate aminotransferase Dat SWALL:DAT_ACIBA (SWALL:P56744) (445 aa) fasta scores: E(): 3.4e-101, 67.19% id in 442 aa, and to Haemophilus influenzae diaminobutyrate--2-oxoglutarate aminotransferase Dat or hi0949 SWALL:DAT_HAEIN (SWALL:P44951) (454 aa) fasta scores: E(): 9.9e-110, 64.15% id in 438 aa; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 0.990
ppc
Phosphoenolpyruvate carboxylase; Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle.
     
 0.546
asnB
Similar to Escherichia coli asparagine synthetase B [glutamine-hydrolyzing] AsnB or b0674 SWALL:ASNB_ECOLI (SWALL:P22106) (553 aa) fasta scores: E(): 9.7e-211, 91.68% id in 553 aa.
     
 0.522
aspA1
Aspartate ammonia-lyase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 7.8e-167, 88.05% id in 477 aa. Also similar to ECA0621 (91.195% id. in 477 aa overlap).
     
 0.517
cfa6
Similar to Pseudomonas syringae type I polyketide synthase Cfa6 SWALL:Q9Z3T9 (EMBL:AF098795) (2731 aa) fasta scores: E(): 0, 60.14% id in 2725 aa, and to Polyangium cellulosum Soraphen polyketide synthase A SorA SWALL:Q9ADL6 (EMBL:U24241) (6315 aa) fasta scores: E(): 0, 43.21% id in 2277 aa.
 
  
 0.505
thrA
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase I [includes: aspartokinase I; homoserine dehydrogenase I] thra or thra1 or thra2 or b0002 SWALL:AK1H_ECOLI (SWALL:P00561) (820 aa) fasta scores: E(): 0, 82.41% id in 819 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
 0.501
metL
Similar to Escherichia coli bifunctional aspartokinase/homoserine dehydrogenase II MetL or MetM or b3940 SWALL:AK2H_ECOLI (SWALL:P00562) (809 aa) fasta scores: E(): 0, 83.12% id in 800 aa; In the C-terminal section; belongs to the homoserine dehydrogenase family.
     
 0.501
asnA
Putative asparagine synthetase A; Similar to Escherichia coli aspartate-ammonia ligase AsnA SWALL:ASNA_ECOLI (SWALL:P00963) (330 aa) fasta scores: E(): 2.7e-107, 81.51% id in 330 aa.
     
  0.499
aspA2
Aspartate ammonia-lyase 2; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri aspartate ammonia-lyase AspA or b4139 or c5222 or sf4293 SWALL:ASPA_ECOLI (SWALL:P04422) (478 aa) fasta scores: E(): 3.2e-169, 89.09% id in 477 aa. Also similar to ECA0426 (91.195% id. in 477 aa overlap).
     
  0.499
lysC
Similar to Escherichia coli lysine-sensitive aspartokinase III LysC or Apk or b4024 SWALL:AK3_ECOLI (SWALL:P08660) (449 aa) fasta scores: E(): 9.4e-136, 80.89% id in 445 aa; Belongs to the aspartokinase family.
     
  0.499
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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