STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pptASimilar to Escherichia coli hypothetical protein ydce or b1461 SWALL:YDCE_ECOLI (SWALL:P31992) (77 aa) fasta scores: E(): 6e-11, 46.66% id in 75 aa, and to Xylella fastidiosa hypothetical protein Xf1725 SWALL:Q9PCQ3 (EMBL:AE003996) (82 aa) fasta scores: E(): 0.0047, 35.13% id in 74 aa; Belongs to the 4-oxalocrotonate tautomerase family. PptA subfamily. (76 aa)    
Predicted Functional Partners:
ECA0844
Similar to Yersinia pestis putative tautomerase ypo3989 SWALL:Q8ZA31 (EMBL:AJ414160) (66 aa) fasta scores: E(): 2.5e-18, 81.81% id in 66 aa, and to Erwinia chrysanthemi hypothetical 8.1 kDa protein in kdgk 5'region SWALL:YKDK_ERWCH (SWALL:P45418) (73 aa) fasta scores: E(): 3.9e-17, 78.12% id in 64 aa.
     
  0.900
pmeB
Similar to Erwinia chrysanthemi pectinesterase B precursor PemB SWALL:PMEB_ERWCH (SWALL:Q47474) (433 aa) fasta scores: E(): 8.6e-100, 65.48% id in 394 aa, and to Erwinia carotovora pectinesterase b pemB SWALL:PMEB_ERWCA (SWALL:P55743) (178 aa) fasta scores: E(): 7.6e-61, 91.47% id in 176 aa.
  
     0.624
ECA1071
Conserved hypothetical protein; Similar to Escherichia coli O157:H7 orf, hypothetical protein z4045 or ecs3591 SWALL:Q8X7Z8 (EMBL:AE005501) (78 aa) fasta scores: E(): 7.7e-25, 81.33% id in 75 aa, and to Salmonella typhimurium, and Salmonella typhi putative cytoplasmic protein stm2923 or sty3048 SWALL:Q8XEM2 (EMBL:AE008833) (78 aa) fasta scores: E(): 2.1e-24, 78.66% id in 75 aa.
  
     0.577
ECA1873
Putative glycosyl hydrolase exoenzyme; Similar to Escherichia coli O6 hypothetical protein yiel or c4641 SWALL:AAN83073 (EMBL:AE016769) (400 aa) fasta scores: E(): 4.7e-106, 70.57% id in 401 aa, and to Shigella flexneri putative xylanase yiel or sf3738 SWALL:AAN45183 (EMBL:AE015381) (402 aa) fasta scores: E(): 5.9e-105, 70.07% id in 401 aa.
  
     0.528
ECA2487
LacI-family transcriptional regulator; Similar to Haemophilus influenzae galactose operon repressor GalR or GalS or hi0821 SWALL:GALR_HAEIN (SWALL:P31766) (332 aa) fasta scores: E(): 5.7e-09, 31.02% id in 303 aa, and to Staphylococcus xylosus probable catabolite control protein A CcpA SWALL:CCPA_STAXY (SWALL:Q56194) (329 aa) fasta scores: E(): 2.5e-08, 26.36% id in 311 aa.
  
     0.484
ECA2246
Similar to Escherichia coli O157:H7 hypothetical protein z0443 or ecs0400 SWALL:Q8X682 (EMBL:AE005214) (262 aa) fasta scores: E(): 7.5e-55, 53.1% id in 258 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62260 (EMBL:AF440524) (256 aa) fasta scores: E(): 3e-53, 54.51% id in 255 aa.
       0.456
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
   
 
 0.452
ECA2490
Putative maltoporin; Weakly similar to Klebsiella pneumoniae maltoporin precursor LamB SWALL:LAMB_KLEPN (SWALL:P31242) (429 aa) fasta scores: E(): 7.1e-14, 25.87% id in 398 aa, and to Escherichia coli maltoporin precursor LamB or MalB or b4036 SWALL:LAMB_ECOLI (SWALL:P02943) (446 aa) fasta scores: E(): 3.4e-05, 24.11% id in 394 aa.
  
     0.449
iutA
Similar to Escherichia coli ferric aerobactin receptor precursor IutA SWALL:IUTA_ECOLI (SWALL:P14542) (732 aa) fasta scores: E(): 0, 75.85% id in 733 aa, and to Shigella boydii IutA SWALL:Q93PE2 (EMBL:AF335540) (732 aa) fasta scores: E(): 0, 75.44% id in 733 aa.
  
     0.440
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.