STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2247Arac-family transcriptional regulator; Similar to Escherichia coli O157:H7 putative AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa putative transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa. (320 aa)    
Predicted Functional Partners:
ECA2246
Similar to Escherichia coli O157:H7 hypothetical protein z0443 or ecs0400 SWALL:Q8X682 (EMBL:AE005214) (262 aa) fasta scores: E(): 7.5e-55, 53.1% id in 258 aa, and to Pseudomonas aeruginosa conserved hypothetical protein SWALL:AAN62260 (EMBL:AF440524) (256 aa) fasta scores: E(): 3e-53, 54.51% id in 255 aa.
 
   
 0.749
rpoD
RNA polymerase sigma-70 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.602
rhaS
L-rhamnose operon regulatory protein; Activates expression of the rhaBAD and rhaT operons.
 
 
 0.576
ECA0047
Putative exported protein; Similar to Yersinia pestis hypothetical protein Ypo3966 SWALL:Q8ZA52 (EMBL:AJ414160) (398 aa) fasta scores: E(): 6.5e-123, 79.74% id in 395 aa, and to Salmonella typhi putative exported protein sty4215 SWALL:Q8Z267 (EMBL:AL627281) (400 aa) fasta scores: E(): 1.4e-118, 75.94% id in 395 aa.
 
      0.572
ECA0350
Similar to Yersinia pestis putative iron-containing alcohol dehydrogenase ypo0678 SWALL:Q8ZI38 (EMBL:AJ414144) (385 aa) fasta scores: E(): 3.8e-112, 76.94% id in 386 aa, and to Escherichia coli hypothetical oxidoreductase YqhD SWALL:YQHD_ECOLI (SWALL:Q46856) (387 aa) fasta scores: E(): 3e-108, 73.64% id in 387 aa.
  
    0.543
nadR
Similar to Salmonella typhimurium transcriptional regulator NadR SWALL:NADR_SALTY (SWALL:P24518) (410 aa) fasta scores: E(): 1.1e-140, 85.5% id in 407 aa, and to Escherichia coli transcriptional regulator NadR or NadI or b4390 SWALL:NADR_ECOLI (SWALL:P27278) (410 aa) fasta scores: E(): 2.2e-139, 83.9% id in 410 aa.
   
  
 0.540
ECA0775
AraC-family transcriptional regulator; Similar to Pseudomonas aeruginosa ChpD SWALL:O87004 (EMBL:U79580) (264 aa) fasta scores: E(): 8.8e-26, 38.49% id in 239 aa, and to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 6.6e-15, 32.51% id in 243 aa. Note that there are no significant database matches to enterobacterial species.
 
 
 0.485
ECA1518
Similar to Pseudomonas putida transcriptional regulator, AraC family pp2383 SWALL:AAN67996 (EMBL:AE016783) (281 aa) fasta scores: E(): 1.1e-30, 40.21% id in 281 aa, and to Vibrio cholerae transcriptional regulator, arac/xyls family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 4.3e-30, 35.44% id in 268 aa.
 
 
 0.454
ECA3837
AraC-family transcriptional regulator; Similar to Vibrio vulnificus AraC-type DNA-binding domain-containing protein vv20572 SWALL:AAO07518 (EMBL:AE016810) (276 aa) fasta scores: E(): 4.1e-52, 48.36% id in 275 aa, and to Vibrio cholerae transcriptional regulator, AraC/XylS family vca1001 SWALL:Q9KKU9 (EMBL:AE004427) (277 aa) fasta scores: E(): 3.6e-50, 50% id in 270 aa.
 
 
 0.454
ECA3469
Similar to Rhizobium loti probable DNA-binding protein mlr2155 SWALL:Q98J14 (EMBL:AP002999) (276 aa) fasta scores: E(): 2.2e-30, 38.69% id in 261 aa, and to Bradyrhizobium japonicum Bll4672 protein bll4672 SWALL:BAC49937 (EMBL:AP005952) (282 aa) fasta scores: E(): 4.5e-47, 49.61% id in 260 aa.
  
  
 0.444
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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