Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ECA2248Conserved hypothetical protein; Similar to Escherichia coli O157:H7 putative mannosyl-3-phosphoglycerate phosphatase yedp or z3045 or ecs2693 SWALL:Q8XB99 (EMBL:AE005417) (271 aa) fasta scores: E(): 1e-36, 43.07% id in 260 aa, and to Salmonella typhimurium, and Salmonella typhi putative mannosyl-3-phosphoglycerate phosphatase yedp or stm1986 or sty2193 SWALL:Q8XGE1 (EMBL:AE008788) (271 aa) fasta scores: E(): 1.1e-35, 40.44% id in 267 aa. (274 aa)    
Predicted Functional Partners:
ECA2249
Conserved hypothetical protein; Similar to Halobacterium sp. Vng0271C SWALL:Q9HSE4 (EMBL:AE004989) (364 aa) fasta scores: E(): 4.4e-26, 33.24% id in 364 aa.
 
   
 0.941
serA
D-3-phosphoglycerate dehydrogenase; Similar to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri D-3-phosphoglycerate dehydrogenase SerA or b2913 or c3494 or z4251 or ecs3784 or sf2898 SWALL:SERA_ECOLI (SWALL:P08328) (409 aa) fasta scores: E(): 4e-129, 82.72% id in 411 aa; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
     
  0.502
pgk
Phosphoglycerate kinase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri phosphoglycerate kinase Pgk or b2926 or c3504 or sf2911 SWALL:PGK_ECOLI (SWALL:P11665) (386 aa) fasta scores: E(): 6.3e-125, 89.11% id in 386 aa.
     
  0.496
prkB
Phosphoribulokinase; Similar to Alcaligenes eutrophus phosphoribulokinase, plasmid CfxP SWALL:KPPP_ALCEU (SWALL:P19924) (291 aa) fasta scores: E(): 6.8e-62, 56.69% id in 284 aa, and to Escherichia coli, and Shigella flexneri probable phosphoribulokinase PrkB or b3355 or sf3374 SWALL:KPPR_ECOLI (SWALL:P37307) (289 aa) fasta scores: E(): 8.9e-100, 86.15% id in 289 aa.
     
  0.496
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
  
    0.467
ECA3947
Similar to Pseudomonas putida D-isomer specific 2-hydroxyacid dehydrogenase family protein pp4589 SWALL:AAN70162 (EMBL:AE016791) (310 aa) fasta scores: E(): 4.3e-61, 56.63% id in 309 aa, and to Pseudomonas aeruginosa probable 2-hydroxyacid dehydrogenase pa1296 SWALL:Q9I448 (EMBL:AE004559) (310 aa) fasta scores: E(): 5.3e-54, 51.94% id in 308 aa.
     
  0.444
ECA2247
Arac-family transcriptional regulator; Similar to Escherichia coli O157:H7 putative AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa putative transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa.
       0.441
ECA2359
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa.
   
    0.432
ECA1310
Similar to Yersinia pestis hypothetical protein Ypo2611 SWALL:Q8ZDF7 (EMBL:AJ414153) (160 aa) fasta scores: E(): 3.3e-46, 76.87% id in 160 aa, and to Salmonella typhimurium putative cytoplasmic protein ybel or stm0653 SWALL:Q8ZQZ2 (EMBL:AE008726) (157 aa) fasta scores: E(): 2.3e-42, 71.25% id in 160 aa.
   
    0.414
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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