STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2248Conserved hypothetical protein; Similar to Escherichia coli O157:H7 putative mannosyl-3-phosphoglycerate phosphatase yedp or z3045 or ecs2693 SWALL:Q8XB99 (EMBL:AE005417) (271 aa) fasta scores: E(): 1e-36, 43.07% id in 260 aa, and to Salmonella typhimurium, and Salmonella typhi putative mannosyl-3-phosphoglycerate phosphatase yedp or stm1986 or sty2193 SWALL:Q8XGE1 (EMBL:AE008788) (271 aa) fasta scores: E(): 1.1e-35, 40.44% id in 267 aa. (274 aa)    
Predicted Functional Partners:
ECA2249
Conserved hypothetical protein; Similar to Halobacterium sp. Vng0271C SWALL:Q9HSE4 (EMBL:AE004989) (364 aa) fasta scores: E(): 4.4e-26, 33.24% id in 364 aa.
 
     0.932
ECA3015
Conserved hypothetical protein; Similar to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein ElaB or stm2311 or sty2542 SWALL:Q8XF60 (EMBL:AE008803) (103 aa) fasta scores: E(): 1e-19, 68.42% id in 95 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 ElaB protein ElaB or b2266 or c2810 or z3526 or ecs3154 SWALL:ELAB_ECOLI (SWALL:P52084) (101 aa) fasta scores: E(): 3.3e-19, 65.26% id in 95 aa.
  
    0.460
ECA2247
Arac-family transcriptional regulator; Similar to Escherichia coli O157:H7 putative AraC-like transcriptional regulator z0442 or ecs0399 SWALL:Q8X683 (EMBL:AE005214) (317 aa) fasta scores: E(): 1.5e-74, 57.64% id in 314 aa, and to Pseudomonas aeruginosa putative transcriptional regulator SWALL:AAN62262 (EMBL:AF440524) (332 aa) fasta scores: E(): 7.5e-68, 55.01% id in 309 aa.
       0.441
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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