STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2260Putative transporter; Similar to Escherichia coli hypothetical transport protein ynfm or b1596 SWALL:YNFM_ECOLI (SWALL:P43531) (417 aa) fasta scores: E(): 3.4e-109, 71.29% id in 411 aa, and to Salmonella typhimurium, and Salmonella typhi putative mfs familty transport protein ynfm or stm1486 or sty1579 SWALL:Q8XH12 (EMBL:AE008764) (417 aa) fasta scores: E(): 2.3e-108, 72.23% id in 407 aa. (422 aa)    
Predicted Functional Partners:
ECA2259
LysR-family transcriptional regulator; Similar to Salmonella typhi putative regulatory protein sty1578 SWALL:Q8Z6X7 (EMBL:AL627270) (299 aa) fasta scores: E(): 3.5e-66, 60.81% id in 296 aa, and to Yersinia pestis putative transcriptional regulator LysR-type y2109 SWALL:AAM85672 (EMBL:AE013813) (307 aa) fasta scores: E(): 1e-72, 69.61% id in 283 aa.
 
     0.622
ECA0822
Putative carbon-nitrogen hydrolase; Similar to Escherichia coli O157:H7 hypothetical protein ybeM SWALL:YBEM_ECO57 (SWALL:P58054) (262 aa) fasta scores: E(): 4.7e-55, 53.25% id in 261 aa.
 
      0.528
tus
Similar to Escherichia coli DNA replication terminus site-binding protein Tus or Tau or b1610 SWALL:TUS_ECOLI (SWALL:P16525) (309 aa) fasta scores: E(): 1.9e-57, 49.34% id in 306 aa, and to Yersinia pestis DNA replication terminus site-binding protein Tus or ypo2265 or y2107 SWALL:TUS_YERPE (SWALL:Q9L6X9) (311 aa) fasta scores: E(): 4e-68, 57.79% id in 308 aa.
       0.503
ECA0705
Partial CDS. Similar to an internal region of Agrobacterium tumefaciens non-ribosomal peptide synthetase MtaD or atu3682 or agr_l_2311 SWALL:Q8U9P4 (EMBL:AE009297) (2399 aa) fasta scores: E(): 0.00074, 32.99% id in 97 aa, and to Anabaena sp. peptide synthetase all2648 SWALL:Q8YTR5 (EMBL:AP003590) (2588 aa) fasta scores: E(): 0.0032, 34.4% id in 93 aa.
  
  
 0.432
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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