STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2265Putative membrane protein; Similar to Pseudomonas resinovorans efflux pump SWALL:BAC41699 (EMBL:AB088420) (319 aa) fasta scores: E(): 4.4e-44, 44.08% id in 313 aa, and to Pseudomonas putida transporter, bile acid/na+ symporter family pp0670 SWALL:AAN66295 (EMBL:AE016776) (317 aa) fasta scores: E(): 6.3e-48, 46.45% id in 310 aa. (325 aa)    
Predicted Functional Partners:
arsH
Arsenical resistance protein; Similar to Yersinia enterocolitica ArsH SWALL:P74987 (EMBL:U58366) (232 aa) fasta scores: E(): 2.8e-86, 91.81% id in 232 aa, and to Salmonella typhimurium ArsH protein SWALL:Q8L245 (EMBL:AP005147) (216 aa) fasta scores: E(): 6.4e-69, 80.09% id in 211 aa.
     
 0.677
wzb
Probable protein-tyrosine-phosphatase; Similar to Salmonella typhimurium low molecular weight protein-tyrosine-phosphatase Wzb or stm2117 SWALL:WZB_SALTY (SWALL:Q9F7B2) (149 aa) fasta scores: E(): 1.5e-34, 65.73% id in 143 aa, and to Erwinia amylovora probable low molecular weight protein-tyrosine-phosphatase AmsI SWALL:AMSI_ERWAM (SWALL:Q46630) (144 aa) fasta scores: E(): 5.8e-37, 69.44% id in 144 aa.
  
  
 0.670
arsR
Similar to Escherichia coli arsenical resistance operon repressor ArsR or ArsE or b3501 SWALL:ARSR_ECOLI (SWALL:P37309) (117 aa) fasta scores: E(): 7.2e-25, 58.09% id in 105 aa.
  
  
 0.641
arsC
Arsenate reductase; Similar to Escherichia coli, and Shigella flexneri arsenate reductase ArsC or ArsG or b3503 or sf3536 SWALL:ARSC_ECOLI (SWALL:P37311) (141 aa) fasta scores: E(): 1.1e-44, 81.56% id in 141 aa.
     
 0.616
arsB
Arsenical pump membrane protein; Involved in arsenical resistance. Thought to form the channel of an arsenite pump; Belongs to the ArsB family.
     
 0.587
ECA2264
Putative exported protein; Similar to Escherichia coli O6 hypothetical protein ydga or c2006 SWALL:AAN80466 (EMBL:AE016761) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa, and to Shigella flexneri orf, conserved hypothetical protein ydga or sf1637 SWALL:AAN43220 (EMBL:AE015185) (502 aa) fasta scores: E(): 3.5e-65, 38.67% id in 512 aa.
       0.523
add
Similar to Escherichia coli adenosine deaminase Add or b1623 SWALL:ADD_ECOLI (SWALL:P22333) (333 aa) fasta scores: E(): 2.2e-89, 71.77% id in 333 aa; Belongs to the metallo-dependent hydrolases superfamily. Adenosine and AMP deaminases family. Adenosine deaminase subfamily.
       0.500
copA
Similar to Escherichia coli copper-transporting P-type ATPase CopA or b0484 SWALL:ATCU_ECOLI (SWALL:Q59385) (833 aa) fasta scores: E(): 4.8e-208, 71.37% id in 835 aa.
  
  
 0.454
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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