STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2268Putative sodium bile acid symporter; Similar to Yersinia pestis putative membrane protein ypo2260 or y2102 SWALL:Q8ZEC0 (EMBL:AJ414151) (342 aa) fasta scores: E(): 2e-105, 85.84% id in 325 aa, and to Escherichia coli hypothetical protein yfeh or b2410 SWALL:YFEH_ECOLI (SWALL:P39836) (332 aa) fasta scores: E(): 9.4e-79, 66.97% id in 324 aa. (330 aa)    
Predicted Functional Partners:
ECA1527
Putative malate/lactate dehydrogenase; Similar to Methanococcus jannaschii L-sulfolactate dehydrogenase ComC or Mdh or mj1425 SWALL:COMC_METJA (SWALL:Q58820) (344 aa) fasta scores: E(): 1.5e-25, 31.57% id in 323 aa, and to Escherichia coli O157:H7 hypothetical oxidoreductase ybic ybic or z1022 or ecs0879 SWALL:YBIC_ECO57 (SWALL:P58409) (361 aa) fasta scores: E(): 4e-52, 43.33% id in 330 aa.
   
    0.596
ECA2467
Putative membrane protein; No significant database matches.
   
    0.596
ECA2269
Putative oxidoreductase; Similar to Shigella flexneri orf, conserved hypothetical protein ydgj or sf1649 SWALL:AAN43231 (EMBL:AE015186) (359 aa) fasta scores: E(): 2.1e-97, 70.57% id in 350 aa, and to Escherichia coli hypothetical oxidoreductase ydgj or b1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-96, 71.01% id in 345 aa.
  
    0.501
araC
Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SWALL:ARAC_ERWCH (SWALL:P07642) (310 aa) fasta scores: E(): 3.7e-129, 97.41% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 arabinose operon regulatory protein AraC or b0064 or z0073 or ecs0068 SWALL:ARAC_ECOLI (SWALL:P03021) (292 aa) fasta scores: E(): 1.2e-62, 57.09% id in 289 aa.
  
    0.501
ECA2267
Putative exported protein; Similar to Brucella suis conserved hypothetical protein br1163 SWALL:AAN30083 (EMBL:AE014417) (164 aa) fasta scores: E(): 2.7e-30, 58.06% id in 155 aa, and to Ralstonia solanacearum hypothetical signal peptide protein rsp1443 or rs03100 SWALL:Q8XQ43 (EMBL:AL646084) (158 aa) fasta scores: E(): 6.4e-26, 56.81% id in 132 aa.
       0.430
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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