STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2269Putative oxidoreductase; Similar to Shigella flexneri orf, conserved hypothetical protein ydgj or sf1649 SWALL:AAN43231 (EMBL:AE015186) (359 aa) fasta scores: E(): 2.1e-97, 70.57% id in 350 aa, and to Escherichia coli hypothetical oxidoreductase ydgj or b1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-96, 71.01% id in 345 aa. (383 aa)    
Predicted Functional Partners:
araC
Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SWALL:ARAC_ERWCH (SWALL:P07642) (310 aa) fasta scores: E(): 3.7e-129, 97.41% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 arabinose operon regulatory protein AraC or b0064 or z0073 or ecs0068 SWALL:ARAC_ECOLI (SWALL:P03021) (292 aa) fasta scores: E(): 1.2e-62, 57.09% id in 289 aa.
    
  0.785
cobB
Putative cobalamin biosynthesis/propionate catabolism protein; Similar to Salmonella typhimurium, and Salmonella typhi CobB protein CobB or stm1221 or sty1261 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-80, 74.81% id in 270 aa, and to Escherichia coli CobB protein CobB or b1120 SWALL:COBB_ECOLI (SWALL:P75960) (279 aa) fasta scores: E(): 3.9e-80, 74.44% id in 270 aa; Belongs to the sirtuin family. Class III subfamily.
    
   0.684
araH
Similar to Escherichia coli, and Shigella flexneri L-arabinose transport system permease protein AraH or b1898/b1899 or sf1945 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 8.1e-103, 87.19% id in 328 aa.
  
    0.594
araG
L-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
  
    0.565
lysS
Lysyl tRNA synthetase; Similar to Escherichia coli, and Escherichia coli O6 lysyl-tRNA synthetase LysS SWALL:SYK1_ECOLI (SWALL:P13030) (504 aa) fasta scores: E(): 1.9e-174, 85.71% id in 504 aa; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.538
ECA2268
Putative sodium bile acid symporter; Similar to Yersinia pestis putative membrane protein ypo2260 or y2102 SWALL:Q8ZEC0 (EMBL:AJ414151) (342 aa) fasta scores: E(): 2e-105, 85.84% id in 325 aa, and to Escherichia coli hypothetical protein yfeh or b2410 SWALL:YFEH_ECOLI (SWALL:P39836) (332 aa) fasta scores: E(): 9.4e-79, 66.97% id in 324 aa.
       0.496
araF
Similar to Escherichia coli L-arabinose-binding periplasmic protein precursor AraF or b1901 SWALL:ARAF_ECOLI (SWALL:P02924) (329 aa) fasta scores: E(): 1.4e-107, 89.87% id in 326 aa.
  
    0.480
mocC
Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa.
 
 
 0.478
ECA2847
Similar to Yersinia pestis hypothetical protein ypo2434 or y1902 SWALL:Q8ZDW4 (EMBL:AJ414152) (70 aa) fasta scores: E(): 4.7e-15, 67.14% id in 70 aa, and to Caulobacter crescentus hypothetical protein Cc0128 SWALL:Q9ABU2 (EMBL:AE005687) (66 aa) fasta scores: E(): 2.2e-05, 43.54% id in 62 aa.
  
    0.475
wecC
UDP-N-acetyl-D-mannosamine dehydrogenase; Catalyzes the four-electron oxidation of UDP-N-acetyl-D- mannosamine (UDP-ManNAc), reducing NAD(+) and releasing UDP-N- acetylmannosaminuronic acid (UDP-ManNAcA); Belongs to the UDP-glucose/GDP-mannose dehydrogenase family. WecC subfamily.
  
 
 0.452
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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