STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2269Putative oxidoreductase; Similar to Shigella flexneri orf, conserved hypothetical protein ydgj or sf1649 SWALL:AAN43231 (EMBL:AE015186) (359 aa) fasta scores: E(): 2.1e-97, 70.57% id in 350 aa, and to Escherichia coli hypothetical oxidoreductase ydgj or b1624 SWALL:YDGJ_ECOLI (SWALL:P77376) (346 aa) fasta scores: E(): 1.5e-96, 71.01% id in 345 aa. (383 aa)    
Predicted Functional Partners:
araC
Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SWALL:ARAC_ERWCH (SWALL:P07642) (310 aa) fasta scores: E(): 3.7e-129, 97.41% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 arabinose operon regulatory protein AraC or b0064 or z0073 or ecs0068 SWALL:ARAC_ECOLI (SWALL:P03021) (292 aa) fasta scores: E(): 1.2e-62, 57.09% id in 289 aa.
       0.780
ECA1457
Similar to Yersinia pestis putative thiamine pyrophosphate-dependent protein ypo2578 SWALL:Q8ZDI8 (EMBL:AJ414152) (648 aa) fasta scores: E(): 1.8e-193, 74.33% id in 643 aa, and to Clostridium perfringens myo-inositol catabolism protein iold or cpe0089 SWALL:Q8XP76 (EMBL:AP003185) (639 aa) fasta scores: E(): 3.3e-142, 57.12% id in 639 aa; Belongs to the TPP enzyme family.
  
  
 0.597
araH
Similar to Escherichia coli, and Shigella flexneri L-arabinose transport system permease protein AraH or b1898/b1899 or sf1945 SWALL:ARAH_ECOLI (SWALL:P08532) (329 aa) fasta scores: E(): 8.1e-103, 87.19% id in 328 aa.
  
    0.592
ECA1465
Similar to Yersinia pestis hypothetical protein ypo2587 or y1155 SWALL:Q8ZDI1 (EMBL:AJ414152) (271 aa) fasta scores: E(): 5.7e-84, 75.09% id in 265 aa, and to Salmonella typhimurium putative inner membrane protein stm4420 SWALL:Q8ZK62 (EMBL:AE008907) (269 aa) fasta scores: E(): 5e-73, 66.54% id in 269 aa.
  
  
 0.588
araG
L-arabinose transport ATP-binding protein; Part of the ABC transporter complex AraFGH involved in arabinose import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Arabinose importer (TC 3.A.1.2.2) family.
  
  
 0.562
cobB
Putative cobalamin biosynthesis/propionate catabolism protein; Similar to Salmonella typhimurium, and Salmonella typhi CobB protein CobB or stm1221 or sty1261 SWALL:COBB_SALTY (SWALL:P97013) (273 aa) fasta scores: E(): 1.4e-80, 74.81% id in 270 aa, and to Escherichia coli CobB protein CobB or b1120 SWALL:COBB_ECOLI (SWALL:P75960) (279 aa) fasta scores: E(): 3.9e-80, 74.44% id in 270 aa; Belongs to the sirtuin family. Class III subfamily.
    
   0.543
mocC
Similar to Rhizobium meliloti rhizopine catabolism protein MocC mocC SWALL:MOCC_RHIME (SWALL:P49304) (325 aa) fasta scores: E(): 1.3e-63, 53.58% id in 293 aa, and to Bacillus subtilis IolE protein IolE e83E SWALL:IOLE_BACSU (SWALL:P42416) (297 aa) fasta scores: E(): 5.1e-37, 37.67% id in 284 aa.
 
  
 0.516
ECA2268
Putative sodium bile acid symporter; Similar to Yersinia pestis putative membrane protein ypo2260 or y2102 SWALL:Q8ZEC0 (EMBL:AJ414151) (342 aa) fasta scores: E(): 2e-105, 85.84% id in 325 aa, and to Escherichia coli hypothetical protein yfeh or b2410 SWALL:YFEH_ECOLI (SWALL:P39836) (332 aa) fasta scores: E(): 9.4e-79, 66.97% id in 324 aa.
  
    0.501
lysS
Lysyl tRNA synthetase; Similar to Escherichia coli, and Escherichia coli O6 lysyl-tRNA synthetase LysS SWALL:SYK1_ECOLI (SWALL:P13030) (504 aa) fasta scores: E(): 1.9e-174, 85.71% id in 504 aa; Belongs to the class-II aminoacyl-tRNA synthetase family.
  
    0.498
ECA2046
Putative bifunctional enzyme including aminotransferase and chitin synthase; Its N-terminal half is similar to several aminotransferases including Escherichia coli VioA SWALL:Q9XCW4 (EMBL:AF125322) (371 aa) fasta scores: E(): 1.6e-29, 32.31% id in 359 aa, and to Streptomyces globisporus amino transferase SWALL:AAL06659 (EMBL:AY048670) (410 aa) fasta scores: E(): 9.5e-29, 32.32% id in 396 aa. Its C-terminal half is similar to many chitin synthases such as Saprolegnia monoica chitin synthase chS SWALL:CHS_SAPMO (SWALL:P48017) (886 aa) fasta scores: E(): 6.2e-20, 24% id in 525 aa, and to [...]
 
  
 0.497
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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