STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
araAL-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose. (501 aa)    
Predicted Functional Partners:
araB
L-ribulokinase; Similar to Escherichia coli L-ribulokinase AraB or b0063 SWALL:ARAB_ECOLI (SWALL:P08204) (565 aa) fasta scores: E(): 7.7e-174, 71.79% id in 553 aa.
 
 
 0.999
pbg
Beta-galactosidase; Similar to Clostridium perfringens beta-galactosidase Pbg SWALL:Q59312 (EMBL:D49537) (676 aa) fasta scores: E(): 1.1e-160, 52.44% id in 675 aa, and to Yersinia pestis puative beta-galactosidase BgaB or ypo0852 or y3237 SWALL:Q8ZHN8 (EMBL:AJ414145) (686 aa) fasta scores: E(): 0, 70.26% id in 686 aa.
  
 
  0.962
galM
Aldose 1-epimerase; Converts alpha-aldose to the beta-anomer.
 
 
 0.960
lacZ
Beta-galactosidase; Similar to Escherichia coli beta-galactosidase LacZ or b0344 SWALL:BGAL_ECOLI (SWALL:P00722) (1023 aa) fasta scores: E(): 0, 64.84% id in 1024 aa; Belongs to the glycosyl hydrolase 2 family.
  
  
 0.958
rafA
Alpha-galactosidase; Similar to Escherichia coli alpha-galactosidase RafA SWALL:RAFA_ECOLI (SWALL:P16551) (708 aa) fasta scores: E(): 7.5e-208, 67.66% id in 705 aa.
  
  
 0.957
ugd
Similar to Escherichia coli UDP-glucose 6-dehydrogenase Ugd or b2028 SWALL:UDG_ECOLI (SWALL:P76373) (388 aa) fasta scores: E(): 2.4e-110, 73.96% id in 388 aa, and to Vibrio cholerae nucleotide sugar dehydrogenase SWALL:Q56625 (EMBL:U47057) (388 aa) fasta scores: E(): 1e-110, 72.93% id in 388 aa.
     
  0.944
araD
Similar to Escherichia coli L-ribulose-5-phosphate 4-epimerase AraD or b0061 SWALL:ARAD_ECOLI (SWALL:P08203) (231 aa) fasta scores: E(): 5.3e-74, 77.48% id in 231 aa.
 
 
 0.939
ECA3793
Putatuve glycosysl hydrolase; Similar to Streptomyces chartreusis alpha-L-arabinofuranosidase II precursor SWALL:ABF2_STRCX (SWALL:P82594) (328 aa) fasta scores: E(): 1e-65, 54.19% id in 286 aa, and to Salmonella typhi putatuve glycosysl hydrolase sty0170 SWALL:Q8Z9F3 (EMBL:AL627265) (316 aa) fasta scores: E(): 2.9e-102, 74.76% id in 313 aa; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.860
ECA3847
Similar to Butyrivibrio fibrisolvens xylosidase/arabinosidase [includes: beta-xylosidase; alpha-L-arabinofuranosidase] xylB SWALL:XYLB_BUTFI (SWALL:P45982) (517 aa) fasta scores: E(): 4.4e-13, 25.19% id in 520 aa, and to Xanthomonas campestris xylosidase/arabinosidase xcc0149 SWALL:Q8PE34 (EMBL:AE012110) (526 aa) fasta scores: E(): 3.3e-128, 58.97% id in 507 aa; Belongs to the glycosyl hydrolase 43 family.
 
 
 0.792
araC
Similar to Erwinia chrysanthemi arabinose operon regulatory protein AraC SWALL:ARAC_ERWCH (SWALL:P07642) (310 aa) fasta scores: E(): 3.7e-129, 97.41% id in 309 aa, and to Escherichia coli, and Escherichia coli O157:H7 arabinose operon regulatory protein AraC or b0064 or z0073 or ecs0068 SWALL:ARAC_ECOLI (SWALL:P03021) (292 aa) fasta scores: E(): 1.2e-62, 57.09% id in 289 aa.
 
  
 0.762
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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