STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompWOuter membrane protein W; Similar to Escherichia coli, and Shigella flexneri outer membrane protein W precursor OmpW or b1256 or sf1259 SWALL:OMPW_ECOLI (SWALL:P21364) (212 aa) fasta scores: E(): 7.2e-54, 62.26% id in 212 aa. (211 aa)    
Predicted Functional Partners:
hemN
Similar to Escherichia coli oxygen-independent coproporphyrinogen III oxidase HemN SWALL:HEMN_ECOLI (SWALL:P32131) (457 aa) fasta scores: E(): 3.5e-152, 80.96% id in 457 aa; Belongs to the anaerobic coproporphyrinogen-III oxidase family.
 
  
 0.680
ompA
Outer-membrane protein A; Similar to Erwinia carotovora putative outer-membrane protein a precursor OmpA SWALL:Q9RM69 (EMBL:AJ249340) (367 aa) fasta scores: E(): 2.6e-120, 90.32% id in 372 aa, and to Serratia marcescens outer membrane protein a precursor OmpA SWALL:OMPA_SERMA (SWALL:P04845) (359 aa) fasta scores: E(): 4.8e-71, 75.61% id in 369 aa; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
  
 0.671
ECA3009
Similar to Vibrio parahaemolyticus coproporphyrinogen oxidase homolog PhuW SWALL:Q9XCY7 (EMBL:AF119047) (420 aa) fasta scores: E(): 3.6e-47, 37.87% id in 396 aa, and to Yersinia pestis putative coproporphyrinogen III oxidase ypo0286 or y0547 SWALL:Q8ZJ42 (EMBL:AJ414141) (437 aa) fasta scores: E(): 2.2e-122, 69.1% id in 437 aa.
  
  
 0.631
UspE
Similar to Salmonella typhimurium putative universal stress protein ydaa or stm1661 SWALL:Q8ZP84 (EMBL:AE008773) (315 aa) fasta scores: E(): 3e-104, 81.58% id in 315 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri protein ydaa or b1333 or c1806 or z2435 or ecs1914 or sf1837 SWALL:AAN43399 (EMBL:AE000231) (325 aa) fasta scores: E(): 3.6e-102, 80% id in 315 aa.
 
  
 0.615
mltA
Membrane-bound lytic murein transglycosylase A precursor; Murein-degrading enzyme. May play a role in recycling of muropeptides during cell elongation and/or cell division.
  
   
 0.595
ECA2304
Putative membrane protein; Similar to Amsacta moorei entomopoxvirus Amv188 amv188 SWALL:Q9EML7 (EMBL:AF250284) (60 aa) fasta scores: E(): 1.4, 43.9% id in 41 aa.
       0.586
ompH
Outer membrane protein; Molecular chaperone that interacts specifically with outer membrane proteins, thus maintaining the solubility of early folding intermediates during passage through the periplasm.
      
 0.582
pflB
Similar to Escherichia coli formate acetyltransferase 1 PflB or Pfl or b0903 SWALL:PFLB_ECOLI (SWALL:P09373) (759 aa) fasta scores: E(): 0, 91.3% id in 759 aa.
      
 0.530
modA
Similar to Escherichia coli molybdate-binding periplasmic protein precursor ModA or b0763 SWALL:MODA_ECOLI (SWALL:P37329) (257 aa) fasta scores: E(): 1e-61, 69.68% id in 254 aa.
   
  
 0.511
modB
Molybdenum transport system permease protein; Part of the binding-protein-dependent transport system for molybdenum; probably responsible for the translocation of the substrate across the membrane; Belongs to the binding-protein-dependent transport system permease family. CysTW subfamily.
   
  
 0.500
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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