STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2307Putative phage-related protein; Similar to an internal region of Bacteriophage T7 protein kinase 0.7 SWALL:KIPA_BPT7 (SWALL:) (359 aa) fasta scores: E(): 0.08, 34% id in 100 aa. (104 aa)    
Predicted Functional Partners:
ECA2308
Putative phage-related protein; Similar to Culex nigripalpus baculovirus Cun001 putative bro protein, atp_gtp_a motif, similar to acmnpv orf 2 cun001 SWALL:Q919R4 (EMBL:AF403738) (593 aa) fasta scores: E(): 0.047, 23.98% id in 246 aa, and to Spodoptera frugiperda ascovirus 1 av1-bro-l10 protein SWALL:Q8JJX7 (EMBL:AJ312699) (268 aa) fasta scores: E(): 0.092, 23.92% id in 209 aa.
       0.661
ECA2306
Probable phage integrase; Similar to Shigella flexneri orf, hypothetical protein sf1608 SWALL:AAN43192 (EMBL:AE015182) (345 aa) fasta scores: E(): 1.1e-57, 55.21% id in 326 aa, and to Salmonella typhi possible integrase sty3193 SWALL:Q8Z3Y1 (EMBL:AL627277) (548 aa) fasta scores: E(): 2.6e-09, 30.68% id in 528 aa.
       0.631
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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