STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2309Putative phage-related protein; Similar to Bacteriophage HK620 DNA-binding protein RoI roI SWALL:Q9AZ12 (EMBL:AF335538) (240 aa) fasta scores: E(): 4, 24.53% id in 216 aa, and to Shigella flexneri orf, partial conserved hypothetical protein sf2861 SWALL:AAN44347 (EMBL:AE015300) (248 aa) fasta scores: E(): 2.1e-49, 58.92% id in 241 aa. (239 aa)    
Predicted Functional Partners:
ECA2310
Hypothetical protein; No significant database matches.
       0.773
ECA2311
Conserved hypothetical protein; Similar to Vibrio cholerae orf28 SWALL:Q9L984 (EMBL:AF179596) (135 aa) fasta scores: E(): 1.6, 30.39% id in 102 aa, and to Salmonella typhi hypothetical protein Sty3189 sty3189 SWALL:Q8Z3Y4 (EMBL:AL627277) (163 aa) fasta scores: E(): 1.2, 25.58% id in 129 aa.
       0.499
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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