STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispZIntracellular septation protein; Involved in cell division; probably involved in intracellular septation; Belongs to the YciB family. (188 aa)    
Predicted Functional Partners:
ECA2314
Putative acyl-CoA thioester hydrolase; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri putative acyl-CoA thioester hydrolase ycia or b1253 or c1719 or sf1256 SWALL:YCIA_ECOLI (SWALL:P04379) (132 aa) fasta scores: E(): 1.2e-41, 80% id in 130 aa, and to Yersinia pestis putative acyl-CoA thioester hydrolase ypo2195 or y2039 SWALL:Q8ZEH6 (EMBL:AJ414151) (149 aa) fasta scores: E(): 1.5e-44, 86.15% id in 130 aa.
       0.738
ECA2305
Similar to Yersinia pestis putative membrane protein ypo2199 or y2042 SWALL:Q8ZEH4 (EMBL:AJ414151) (256 aa) fasta scores: E(): 8.8e-50, 55.42% id in 249 aa, and to Salmonella typhimurium putative inner membrane protein ycic or stm1734 SWALL:Q8ZP49 (EMBL:AE008777) (247 aa) fasta scores: E(): 9.6e-49, 55.82% id in 249 aa.
  
    0.579
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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