STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
oppFSimilar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppF or stm1742 SWALL:OPPF_SALTY (SWALL:P08007) (334 aa) fasta scores: E(): 1.9e-108, 85.88% id in 333 aa; Belongs to the ABC transporter superfamily. (344 aa)    
Predicted Functional Partners:
oppD
Similar to Salmonella typhimurium oligopeptide transport ATP-binding protein OppD or stm1743 SWALL:OPPD_SALTY (SWALL:P04285) (335 aa) fasta scores: E(): 3.4e-102, 86.29% id in 321 aa; Belongs to the ABC transporter superfamily.
 
0.999
oppC
Similar to Salmonella typhimurium oligopeptide transport system permease protein OppC or stm1744 SWALL:OPPC_SALTY (SWALL:P08006) (302 aa) fasta scores: E(): 8.6e-101, 86.09% id in 302 aa.
 0.999
oppB
Similar to Salmonella typhimurium oligopeptide transport system permease protein OppB or stm1745 SWALL:OPPB_SALTY (SWALL:P08005) (306 aa) fasta scores: E(): 2e-103, 90.52% id in 306 aa.
 
 0.999
oppA1
Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 3.2e-174, 76.33% id in 545 aa. Also highly similar to ECA2325 80.784% id.
 
 
 0.999
oppA2
Similar to Salmonella typhimurium periplasmic oligopeptide-binding protein precursor OppA or stm1746 SWALL:OPPA_SALTY (SWALL:P06202) (543 aa) fasta scores: E(): 4.8e-173, 76.44% id in 535 aa. Also highly similar to ECA2324 80.784% id.
 
 
 0.999
ECA1942
Similar to Escherichia coli periplasmic oligopeptide-binding protein precursor OppA or b1243 SWALL:OPPA_ECOLI (SWALL:P23843) (543 aa) fasta scores: E(): 1.2e-106, 49.35% id in 545 aa.
 
 
 0.989
mppA
Similar to Escherichia coli periplasmic murein peptide-binding protein precursor MppA or b1329 SWALL:MPPA_ECOLI (SWALL:P77348) (537 aa) fasta scores: E(): 1.5e-156, 72.11% id in 538 aa.
 
 
 0.988
ECA1548
Similar to Streptomyces coelicolor putative transport system permease protein sco6645 or sc4g2.19 SWALL:O86691 (EMBL:AL939128) (601 aa) fasta scores: E(): 9.4e-94, 50.35% id in 562 aa, and to Agrobacterium tumefaciens ABC transporter, membrane spanning protein nikb or atu1198 or agr_c_2209 SWALL:Q8UG44 (EMBL:AE009082) (314 aa) fasta scores: E(): 3.6e-20, 31.33% id in 300 aa.
 
 0.926
ECA0135
ABC transporter permease protein; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 dipeptide transport system permease protein DppC or b3542 or c4357 or z4959 or ecs4422 SWALL:DPPC_ECOLI (SWALL:P37315) (300 aa) fasta scores: E(): 5.1e-44, 45.26% id in 285 aa, and to Ralstonia solanacearum probable transmembrane ABC transporter protein rsc1382 or rs04665 SWALL:Q8XZL3 (EMBL:AL646064) (299 aa) fasta scores: E(): 3.3e-62, 57.71% id in 298 aa.
 0.905
ECA1006
Similar to Agrobacterium tumefaciens ABC transporter, membrane spanning protein atu3435 or agr_l_2782 SWALL:Q8UAD9 (EMBL:AE009274) (341 aa) fasta scores: E(): 2.7e-69, 61.92% id in 302 aa, and to Rhizobium meliloti probable ABC transporter, permease protein ra1137 or sma2083 SWALL:Q92XV3 (EMBL:AE007299) (332 aa) fasta scores: E(): 5.3e-66, 65.92% id in 270 aa.
 0.903
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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