STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2345Putative aldose 1-epimerase; Similar to Salmonella typhimurium putative enzymes related to aldose 1-epimerase yead or stm1289 SWALL:Q8ZPV9 (EMBL:AE008756) (294 aa) fasta scores: E(): 2.7e-73, 58.7% id in 293 aa, and to Yersinia pestis hypothetical protein ypo2156 or y2166 SWALL:Q8ZEK9 (EMBL:AJ414151) (291 aa) fasta scores: E(): 7.4e-83, 64.01% id in 289 aa. (289 aa)    
Predicted Functional Partners:
pgm
Phosphoglucomutase; Similar to Escherichia coli phosphoglucomutase Pgm or b0688 SWALL:PGMU_ECOLI (SWALL:P36938) (546 aa) fasta scores: E(): 5e-188, 87.72% id in 546 aa.
     
 0.919
pgi
Glucose-6-phosphate isomerase; Similar to Escherichia coli, and Escherichia coli O157:H7 glucose-6-phosphate isomerase Pgi or b4025 or z5623 or ecs5008 SWALL:G6PI_ECOLI (SWALL:P11537) (549 aa) fasta scores: E(): 1.4e-193, 86.86% id in 548 aa.
  
 
 0.915
crr
PTS system, glucose-specific IIa component; Similar to Escherichia coli, Escherichia coli O6, and Shigella flexneri PTS system, glucose-specific IIA component Crr or Gsr or Iex or Tgs or Tred or b2417 or c2952 or sf2472 SWALL:PTGA_ECOLI (SWALL:P08837) (168 aa) fasta scores: E(): 5e-53, 95.23% id in 168 aa.
  
  
  0.912
glk
Glucokinase; Similar to Escherichia coli, and Escherichia coli O157:H7 glucokinase Glk or b2388 or z3654 or ecs3268 SWALL:GLK_ECOLI (SWALL:P46880) (321 aa) fasta scores: E(): 7.3e-98, 76.32% id in 321 aa; Belongs to the bacterial glucokinase family.
    
  0.911
ECA0662
6-phospho-beta-glucosidase; Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 3.8e-144, 71.67% id in 459 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 4.5e-139, 67.74% id in 462 aa; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
ECA0859
Beta-glucosidase; Similar to Caldocellum saccharolyticum beta-glucosidase A bglA SWALL:BGLS_CALSA (SWALL:P10482) (455 aa) fasta scores: E(): 3.1e-50, 38.13% id in 472 aa, and to Clostridium acetobutylicum beta_glucosidase cap0010 SWALL:Q97TT6 (EMBL:AE001438) (469 aa) fasta scores: E(): 7.2e-116, 57.96% id in 471 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.5e-53, 39.42% id in 487 aa; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
ECA1451
Probable glycosyl hydrolase; Similar to Escherichia coli 6-phospho-beta-glucosidase BglA or b2901 SWALL:BGLA_ECOLI (SWALL:Q46829) (479 aa) fasta scores: E(): 2.3e-55, 42.14% id in 484 aa, and to Streptomyces sp beta-glucosidase bgl3 SWALL:Q59976 (EMBL:Z29625) (479 aa) fasta scores: E(): 8.1e-57, 38.13% id in 472 aa; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
ptsG
PTS system, glucose-specific IIBC component; Similar to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 PTS system, glucose-specific IIBC component PtsG or GlcA or Umg or b1101 or c1373 or z1740 or ecs1479 SWALL:PTGB_ECOLI (SWALL:P05053) (477 aa) fasta scores: E(): 7.7e-159, 87.42% id in 477 aa.
     
  0.900
arbB
6-phospho-beta-glucosidase; Similar to Erwinia chrysanthemi 6-phospho-beta-glucosidase ArbB SWALL:ARBB_ERWCH (SWALL:P26206) (465 aa) fasta scores: E(): 2.3e-165, 80.56% id in 463 aa, and to Escherichia coli 6-phospho-beta-glucosidase BglB or b3721 SWALL:BGLB_ECOLI (SWALL:P11988) (470 aa) fasta scores: E(): 1.1e-149, 72.6% id in 460 aa; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
ascB
6-phospho-beta-glucosidase; Similar to Escherichia coli 6-phospho-beta-glucosidase AscB or b2716 SWALL:ASCB_ECOLI (SWALL:P24240) (474 aa) fasta scores: E(): 1.2e-171, 83.26% id in 472 aa; Belongs to the glycosyl hydrolase 1 family.
     
 0.900
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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