STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ECA2348Conserved hypothetical protein; Similar to Salmonella typhimurium putative ser protein kinase yeag or stm1285 SWALL:Q8ZPW2 (EMBL:AE008755) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa, and to Escherichia coli, Escherichia coli O6, and Escherichia coli O157:H7 hypothetical protein yeag or b1783 or c2188 or z2823 or ecs2492 SWALL:YEAG_ECOLI (SWALL:P77391) (644 aa) fasta scores: E(): 0, 94.09% id in 644 aa. (644 aa)    
Predicted Functional Partners:
ECA2349
Conserved hypothetical protein; Similar to Salmonella enterica subsp. enterica serovar Typhi Ty2 hypothetical protein t1163 SWALL:AAO68822 (EMBL:AE016838) (428 aa) fasta scores: E(): 2.7e-140, 86.85% id in 426 aa, and to Escherichia coli hypothetical protein yeah or b1784 SWALL:YEAH_ECOLI (SWALL:P76235) (427 aa) fasta scores: E(): 3.6e-139, 87.41% id in 421 aa; Belongs to the UPF0229 family.
 
  
 0.997
ECA2359
Conserved hypothetical protein; Similar to Salmonella typhimurium putative cytoplasmic protein ycgb or stm1804 SWALL:Q8ZP16 (EMBL:AE008780) (510 aa) fasta scores: E(): 1.3e-185, 85.6% id in 507 aa, and to Escherichia coli hypothetical protein ycgb or b1188 SWALL:YCGB_ECOLI (SWALL:P29013) (510 aa) fasta scores: E(): 4.9e-185, 84.98% id in 506 aa.
 
  
 0.990
dkgA
Similar to Escherichia coli 2,5-diketo-D-gluconic acid reductase A DkgA or b3012 SWALL:DKGA_ECOLI (SWALL:Q46857) (275 aa) fasta scores: E(): 1e-80, 72.42% id in 272 aa. In Salmonella typhi this is a putative pseudogene but it is apparently intact here.
   
    0.770
dps
DNA protection during starvation protein; During stationary phase, binds the chromosome non- specifically, forming a highly ordered and stable dps-DNA co-crystal within which chromosomal DNA is condensed and protected from diverse damages. It protects DNA from oxidative damage by sequestering intracellular Fe(2+) ion and storing it in the form of Fe(3+) oxyhydroxide mineral, which can be released after reduction. One hydrogen peroxide oxidizes two Fe(2+) ions, which prevents hydroxyl radical production by the Fenton reaction.
   
    0.636
ECA0639
Similar to Yersinia pestis putative membrane protein ypo0570 SWALL:AAM87157 (EMBL:AJ414143) (101 aa) fasta scores: E(): 2.3e-22, 76.23% id in 101 aa, and to Salmonella typhimurium, and Salmonella typhi putative inner membrane protein stm3229 or sty3409 SWALL:Q8XEQ1 (EMBL:AE008848) (101 aa) fasta scores: E(): 9.6e-21, 71.28% id in 101 aa, and to Escherichia coli, Escherichia coli O6, Escherichia coli O157:H7, and Shigella flexneri hypothetical protein YqjD SWALL:YQJD_ECOLI (SWALL:P42617) (101 aa) fasta scores: E(): 2.2e-20, 69.3% id in 101 aa.
   
    0.634
ECA0640
Putative exported protein; Similar to Salmonella typhimurium, and Salmonella typhi putative periplasmic protein stm3228 or sty3408 SWALL:Q8XF23 (EMBL:AE008848) (122 aa) fasta scores: E(): 1.4e-12, 49.15% id in 118 aa, and to Escherichia coli protein YqjC SWALL:YQJC_ECOLI (SWALL:P42616) (122 aa) fasta scores: E(): 1.6e-12, 50.83% id in 120 aa.
   
    0.615
glgA
Glycogen synthase; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.569
ECA3603
Putative flavodoxin; Similar to Agrobacterium tumefaciens flavodoxin WrbA or atu4201 or agr_l_1309 SWALL:Q8U897 (EMBL:AE009349) (193 aa) fasta scores: E(): 1.2e-43, 65.73% id in 178 aa, and to Escherichia coli hypothetical 19.6 kDa protein SWALL:Q9F7X7 (EMBL:AF270497) (183 aa) fasta scores: E(): 3.8e-49, 69.78% id in 182 aa.
   
    0.561
ECA2396
Putative fructosamine kinase; Similar to Yersinia pestis hypothetical protein ypo2444 ypo2444 or y1892 SWALL:Q8ZDV8 (EMBL:AJ414152) (291 aa) fasta scores: E(): 1.1e-92, 72.53% id in 284 aa, and to Escherichia coli hypothetical protein ynia ynia or b1725 SWALL:YNIA_ECOLI (SWALL:P77739) (286 aa) fasta scores: E(): 1.6e-89, 70.42% id in 284 aa; Belongs to the fructosamine kinase family.
   
    0.557
osmC
Similar to Escherichia coli, and Shigella flexneri osmotically inducible protein C OsmC or b1482 or sf1743 SWALL:OSMC_ECOLI (SWALL:P23929) (142 aa) fasta scores: E(): 4.2e-45, 87.14% id in 140 aa.
   
    0.553
Your Current Organism:
Pectobacterium atrosepticum
NCBI taxonomy Id: 218491
Other names: Erwinia carotovora subsp. atroseptica SCRI1043, Erwinia carotovora subsp. atroseptica str. SCRI1043, P. atrosepticum SCRI1043, Pectobacterium atrosepticum SCRI1043, Pectobacterium atrosepticum str. SCRI1043, Pectobacterium atrosepticum strain SCRI1043, Pectobacterium carotovora subsp. atroseptica SCRI1043, Pectobacterium carotovora subsp. atroseptica str. SCRI1043
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